BAC Information

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BAC

Clone NameMSMg01-237N18
Chromosome2 (Build37)
Map Location 49,186,255 - 49,186,531
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383691, LOC100041457, LOC383692, Acvr2a, Orc4l, LOC100041508, Mbd5, LOC100042719, LOC666709, LOC435666
Downstream geneEpc2, Kif5c, 2310010M24Rik, Lypd6, 2010311D03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-237N18.T7 (MSMg01no237_n18.b1)MSMg01-237N18.TJ (MSMg01no237_n18.g1)
ACCAG402685AG402686
length752669
length of high quality
(start - end)
241 (74 - 314)294 (353 - 646)
definitionCHROMAT_FILE: MSMg01no237_n18.b1 PHD_FILE: MSMg01no237_n18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:47 2005CHROMAT_FILE: MSMg01no237_n18.g1 PHD_FILE: MSMg01no237_n18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:55:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTGAGTGAGTAAATGAGTGGGTCTCTG
ATTTTTGTGCTTTCTCTCGGGCTATTTTTCTTCTGTTGCTTTATTTTGTT
CAACTTCCACATTATAAATTTCTTTTATCTTATTATATTCTATTTTGTAA
TTTCATAATTACAAAATAGAGTATAATTATTTTATAATTATTTCTTAGAA
CCTATTTTCTAATGAGAGAGAAAGGGAGTAGATCGGGGTAGGAGGGGAGG
TGGAAAGGAACATTTTTTTTATAGNGCGNNTCCTTTTTCCGNNGGAAGTT
TTTTTTTATTTTCCCCCCCCCCCCCCCCAATAAGGTTGATAGTATATTTA
TGGTTTTTTTGGGTCCCCAAAAAAAAAAAAAAATTTTTGTTGGGGGGGGG
GGGCTCCTCTCCATCATAATCCATACCCTCTAATCTCTATTTTTGCATCT
GTTCATAACTTCACATTCCTCCTACTTCTCCCACTTCTCCCCTCCCTCTA
TACCCTTATTTCCACCTTTTTTATCCCCTCTCATCTACAAACATATCTTT
CTTTTTGTAAATACTATAATTATCTTCCCCCCTTTTAATTCATCACATTT
TTTTTTTTATTAAACTCCCCCTCATTCTTTTTTTAATACTACTACTTATT
TCCCCCACCCATCCTTTCTTTATTTTCATTATATACCTACTCCCCCCCAC
CT
CTCACTATCCGGAGAGGATCCGCGGAATTCTCTTCTTCCCATGGGCTGGT
TGTGGAGCCTTGCTTCTAACCACAAGAGGTCAGCAGGAGCAGCCCTATTG
GATCTGAGGCAGACAAGGCACACTGTCCCCATCTTCTGCTTTCCACTTCA
GAGCTCTTGTCCTTAGAACCCAGACACCATGCTAGAGGAAGCCCACACCA
CAGAGACACCACGTGAAAGCCTTATGGCCAACAGTGCCAATCAGGGTCTC
AGTTAGCAGCTCGTTTCAAACATACTACAGTGAGTCCATGTAACTCCTCA
GGCATGGTCTGACTGCCAAGAAATCCCAGTGTACTTGCCACCTCCCGAGT
CTGGCCAGGGCATAGAGGTCATGTAGTCACATATGTTGTGACATATATTC
TTGAGTCCTGTTTCTGATCCCAAAGGTGTACGAATGTCATAGTTGAAGAA
TGACATATGATTTTCATATCATCACCTAAGTGGCCTTGGTGTGAAGTAAA
GTAACAGGTAGTGTGTGCTCCATTTTTGTCTCCTGGATGACAGCCTGTAG
CTCTGGGACACCCAAAGCCCATCTTCCATTTTTGCTACCACTGTTAGGCT
TCCTTATAATTGCTTTGATTTCAAAGGAATATGAAGGTCTTGGACAAGGA
AAATTTTAGACTTTAATGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no237_n18.g1 MSMg01no237_n18.g1 CHROMAT_FILE:
MSMg01no237_n18.g1 PHD_FILE: MSMg01no237_n18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:55:47 2005
         (294 letters)



>mm_chr2_49186038_49186731
          Length = 694

 Score =  505 bits (261), Expect = e-147
 Identities = 273/277 (98%)
 Strand = Plus / Minus

                                                                       
Query: 18  catgtagtcacatatgttgtgacatatattcttgagtcctgtttctgatcccaaaggtgt 77
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 catgtagtcacatctgttgtgacatatattcttgagtcctgtttctgatcccaaaggtgt 435

                                                                       
Query: 78  acgaatgtcatagttgaagaatgacatatgattttcatatcatcacctaagtggccttgg 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 acgaatgtcatagttgaagaatgacatatgattttcatatcatcacctaagtggccttgg 375

                                                                       
Query: 138 tgtgaagtaaagtaacaggtagtgtgtgctccatttttgtctcctggatgacagcctgta 197
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 374 tgtgaagtaaagtaacaggtagtgtgtactccatttttgtctcctggatgacagcctgta 315

                                                                       
Query: 198 gctctgggacacccaaagcccatcttccatttttgctaccactgttaggcttccttataa 257
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 314 gctctgggacacccaaagcccatcttccatctttgctaccactgttaggcttccttataa 255

                                                
Query: 258 ttgctttgatttcaaaggaatatgaaggtcttggaca 294
           |||||||||||||||||||||||||||||| ||||||
Sbjct: 254 ttgctttgatttcaaaggaatatgaaggtcatggaca 218


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)