Query= MSMg01no260_a18.b1 MSMg01no260_a18.b1 CHROMAT_FILE:
MSMg01no260_a18.b1 PHD_FILE: MSMg01no260_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:01 2005
(478 letters)
>mm_chr2_46671380_46672257
Length = 878
Score = 857 bits (443), Expect = 0.0
Identities = 467/475 (98%)
Strand = Plus / Plus
Query: 4 ggaattcattggtctctccatatttaccttggagagagtaataatgagcttctgaacaca 63
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcattggtctcacaatatttaccttggagagagtaataatgagcttctgaacaca 263
Query: 64 aaataagagtggaagagcattttgaacacaggtttgttaagggaaagctgaatagaatta 123
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaataagagtggaagagtattttgaacacaggtttgttaagggaaagctgaatagaatta 323
Query: 124 acttatttaagaatatcttgattctgcatgtaaaaggtcacgatttgcatacagccatac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 acttatttaagaatatcttgattctgcatgtaaaaggtcacgatttgcatacagccatac 383
Query: 184 tgatatgtaaaatattttataaaacttaatttatcctcactcttgaggccaaaatctgtc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgatatgtaaaatattttataaaacttaatttatcctcactcttgaggccaaaatctgtc 443
Query: 244 tggagaagataatttagttcatgttattgtgctgtgtgctgtagaatgaagtgatttctc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tggagaagataatttagttcatgttattgtgctgtgtgctgtagaatgaagtgatttctc 503
Query: 304 atctaaattcatttattcttagtaatcattaataaaatgtatgtttttagaataaatttt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atctaaattcatttattcttagtaatcattaataaaatgtatgtttttagaataaatttt 563
Query: 364 caatttggaccaattatttcctgtttatacttctttattatggagagactctgcagtgaa 423
||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 564 caatttggagtaattatttcctgtttatacttctttattatggagagactccgcagtgaa 623
Query: 424 aaatggagagcttaggaaaggagtatggttgaaaacagccattcagaccttcctt 478
|| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 624 aagtggagagcttaggaaaggagtatggttgaaaacagccattcagaccctcctt 678
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space: 406224
Effective search space used: 406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no260_a18.g1 MSMg01no260_a18.g1 CHROMAT_FILE:
MSMg01no260_a18.g1 PHD_FILE: MSMg01no260_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:01 2005
(619 letters)
>mm_chr2_46814809_46815826
Length = 1018
Score = 1181 bits (611), Expect = 0.0
Identities = 617/619 (99%), Gaps = 1/619 (0%)
Strand = Plus / Minus
Query: 1 caaaattagccgggcatggtggcgcacacctttaatcccagcactcgggaggcagaggca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 caaaattagccgggcatggtggcgcacacctttaatcccagcactcgggaggcagaggca 565
Query: 61 ggtggatttctgagttcaaggccagcctggtctacagagggagttccaggacagccaggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ggtggatttctgagttcaaggccagcctggtctacagagggagttccaggacagccaggg 505
Query: 121 ctatacagaaaaaccctgtcttgaaaaacaaaacaaaacaaaacaaaaaacaaacaaaca 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctatacagaaaaaccctgtcttgaaaaacaaaacaaaacaaaacaaaaaacaaacaaac- 446
Query: 181 aaaaaaaagaattccaaaattgactctctgttggacgaatgagatttggttgttatactg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaaaaaaagaattccaaaattgactctctgttggacgaatgagatttggttgttatactg 386
Query: 241 ttggagaaattccaaataatcacaaagtaaagaataaaatttaaaataaatttgtattta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttggagaaattccaaataatcacaaagtaaagaataaaatttaaaataaatttgtattta 326
Query: 301 agactaatacataattattatcaattaaatcaagagataaaatacacaaatgaagcatca 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 325 agactaatacataattattatcaattaaatcaagagataaaatacagaaatgaagcatca 266
Query: 361 attcctctttggatgaaagtaagtgtgttattttgacaaataacacaagttcaatggctt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attcctctttggatgaaagtaagtgtgttattttgacaaataacacaagttcaatggctt 206
Query: 421 tataagtggtatatctgaaacaagagtggattttggtaaacaaatcaactagagcaatag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tataagtggtatatctgaaacaagagtggattttggtaaacaaatcaactagagcaatag 146
Query: 481 cactattgctcatgtaattacattaattaaaatctaattattcatgtgtacactttttat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 cactattgctcatgtaattacattaattaaaatctaattattcatgtgtacactttttat 86
Query: 541 cattttctgtggtagcagaccactgaagcactatcttttagaataaattactaaatgttg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85 cattttctgtggtagcagaccactgaagcactatcttttagaataaattactaaatgttg 26
Query: 601 aatgctttaaaatgaccta 619
|||||||||||||||||||
Sbjct: 25 aatgctttaaaatgaccta 7
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1018
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1008
Effective search space: 613872
Effective search space used: 613872
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
