Query= MSMg01no260_b15.b1 MSMg01no260_b15.b1 CHROMAT_FILE:
MSMg01no260_b15.b1 PHD_FILE: MSMg01no260_b15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:05 2005
(565 letters)
>mm_chr2_169114366_169115330
Length = 965
Score = 590 bits (305), Expect = e-172
Identities = 340/355 (95%), Gaps = 7/355 (1%)
Strand = Plus / Minus
Query: 5 gaattctttaaactccccaggcatgacttcctatccggaagtacaaacaaaaagcaagag 64
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 355 gaattctttaaactccacaggcatgacttcttatccggaagtacaaacaaaaagcaagag 296
Query: 65 gccaggccgcagcaaggggttcctggataactgcattagtttccttgcttcggtggccac 124
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 295 gccaggccgcagcaaggggttcctggataactgcattagtttccttgctgcggtggccac 236
Query: 125 caccctgcagacccaaactaagaaagcgtcttgatttgaatatgcttggccaagggagtg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 caccctgcagacccaaactaagaaagcgtcttgatttgaatatgcttggccaagggagtg 176
Query: 185 gcactgttaagaggcatggctttgttggagtaggtgtgtcactgtgggcgtgggctttaa 244
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 175 gcactgtttagaggcatggctttgttggagtaggtgtgtcactgtgggagtgggctttaa 116
Query: 245 gttcctatcctaacttcctgaaagtcagtattctactagcagccttccgatgaagattta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 gttcctatcctaacttcctgaaagtcagtattctactagcagccttccgatgaagattta 56
Query: 305 gaactct--g-----cgagcatcgtgcctacctgggagttgtcctgttccctcct 352
||||||| | || ||||||||||||||||| ||||||||||||| |||||
Sbjct: 55 gaactctcagctcttcgtgcatcgtgcctacctggaagttgtcctgttctctcct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space: 530025
Effective search space used: 530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no260_b15.g1 MSMg01no260_b15.g1 CHROMAT_FILE:
MSMg01no260_b15.g1 PHD_FILE: MSMg01no260_b15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:05 2005
(470 letters)
>mm_chr2_168947264_168948136
Length = 873
Score = 613 bits (317), Expect = e-180
Identities = 419/475 (88%), Gaps = 39/475 (8%)
Strand = Plus / Plus
Query: 1 tccttgcccactatagaagtactgtggcgagtgcacacatgtgncg--cgtggacacaca 58
|||||||||||||||||||||||| |||||||||||||||| || | |||||||
Sbjct: 231 tccttgcccactatagaagtactg-ggcgagtgcacacatg---cgcacatggacac--- 283
Query: 59 cacacacacacacacacacacacaaacacacacacacacactgctgcatccagctttgtg 118
|||||||||||||||||||||| ||||||||||||
Sbjct: 284 -------------------------acacacacacacacactgctgcgtccagctttgtg 318
Query: 119 tgggtcctggaggtgaggactcaggtcttcctgcttgcaaggcaaacatctttaccactg 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tgggtcctggaggtgaggactcaggtcttcctgcttgcaaggcaaacatctttaccactg 378
Query: 179 agagctgcctccccagccccagagccagctgttagtgctagtctagggcctacacgactg 238
| |||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||
Sbjct: 379 aaagctgcctccccagccccagagccggctgttagtgctagtctagggcctagaagactg 438
Query: 239 tgctgagtatctccgtggtatcccaggaagaaacctgggtcctggcttttcagaaaccag 298
||| ||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 439 tgccgagtatc-ccggggtatcccaggaagaaacctgggtcctcgcttttcagaaaccag 497
Query: 299 gccaagtataaacattctccaggtggcagaaattcaagtttctgggcgacaaaaatcaaa 358
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 498 gccaagtataaacattctccaggtggcagaaattcaagtttctgggtgataaaaatcaaa 557
Query: 359 tcaagaacaaataagggtcacttcc----tgggagtcttcatactgggtcacagagtcac 414
|||| |||||||||||||||||||| ||||||||||||||||||| ||||||| |||
Sbjct: 558 tcaaaaacaaataagggtcacttccagtatgggagtcttcatactgggccacagagccac 617
Query: 415 gcgtaaaagaatttctggtggaagagtttggcggaaggactgagggagagggagg 469
| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 618 gagtaaaagaatttctgatggaagagtttggcggaaggactgagggagcgggagg 672
Score = 72.3 bits (37), Expect = 7e-17
Identities = 45/49 (91%), Gaps = 3/49 (6%)
Strand = Plus / Minus
Query: 51 gacacacacacacacacacacacacacacaca---aacacacacacaca 96
|||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 121 gacacacacacacacacacacacacacacacatacaacacaaacacaca 73
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 470
Length of database: 873
Length adjustment: 10
Effective length of query: 460
Effective length of database: 863
Effective search space: 396980
Effective search space used: 396980
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
