BAC Information

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BAC

Clone NameMSMg01-260C08
Chromosome2 (Build37)
Map Location 154,350,528 - 154,350,900
singlet/doubletsinglet
Overlap geneCbfa2t2
Upstream geneCommd7, 7530422B04Rik, Dnmt3b, LOC668932, Mapre1, EG329541, LOC100043869, Spag4l, Bpil1, Bpil3, Rya3, LOC100043870, Gm1006, EG545477, Psp, LOC100043652, 1700058C13Rik, Plunc, 2310021H06Rik, U46068, BC018465, 5430413K10Rik, OTTMUSG00000015915, Cdk5rap1, Snta1
Downstream geneApba2bp, 1700003F12Rik, E2f1, Pxmp4, Zfp341, Chmp4b, LOC668936, LOC435692, Raly, Eif2s2, a, Ahcy, Itch, LOC100043877, LOC668931, Dynlrb1, Map1lc3a, Cdc91l1, Trp53inp2, Ncoa6, LOC668938, Ggtl3, Acss2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-260C08.T7 (MSMg01no260_c08.b1)MSMg01-260C08.TJ (MSMg01no260_c08.g1)
ACCAG402890AG402891
length743735
length of high quality
(start - end)
373 (82 - 454)469 (81 - 549)
definitionCHROMAT_FILE: MSMg01no260_c08.b1 PHD_FILE: MSMg01no260_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:09 2005CHROMAT_FILE: MSMg01no260_c08.g1 PHD_FILE: MSMg01no260_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTTNTCTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGA
ATGCGCGGAATTCCTTCTTTTTTCCATGAGGCAGGACCCTCTCTCTATTA
TCACAGAGGCATACATCAAGCAGGTTTGATACTGTTGGACTTGGTTTTGT
TGTTCATTTTCTGGGTTGGTTTTCAAGATGTTTCTCACTCTGTAGCGCTG
ACACAAACTTGCCTCAGCCTGCCACTGCTGAGTGAGATTACAGCCCACAG
CTAATCCTGTGATTTTTGTTATGTCCAATCCCAGTCTAGAAAGCTTTGGT
AGGGGGTGCACACAGGCCAGAGCTTTTGTACCCTGTCTTGAGGAGGAGAA
ATTTATGCTCCAATGGAGAAGATTAGTAGCCAGAAAAATAGGTGACATCT
GAACTTTGGTGACTGGATGTATCCTAACCATGACACTTGCCCTCCTGAGC
AGTGGCCTGGCTTCAGACCAGTAGTACAAAAGATCAGTAAGAGAGAAAAA
AGAGAGTACTATGTATGTCACATCACTCCTAGCTACTTGGATGTTTGTGT
TCACCACATTCCTTCTTGAAGTCCATTACTCCACTTTGTTTTCTTTTCCC
AGTTACCCTCCACTACCTAGAGACTGTCTTCTTAAGACTAGCTTACACCA
AGTTAGGTTACTTCATACTTGAAGTATCCTATATGAGCGTTTACCTCTAT
GTAAGCCACGACATACCCCTATCTTCAAATGTTCCATTACCTG
NCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACTTAAACAACTCTCAGAC
ATTGAAACTGAGAACCAGAGAGCCATAGGTCTTGGCTATTCCATGCCTTT
ATTAAAACGTGTCAAAGCCAGATGCAGTGATACAAGGCTGTTCTCCCAGC
ACTCATGAGGCTGAGGGAGAAAGATTTTGGTTTGAAGGACAGTGTGGACT
TCAAAAGTGAGACCCAGTCTCAAGGAAGGAAAACAAATTCATAAAAATAA
GCAGACAAATGCTTGCTATGCAGCACACACCTGTAAGCTCTGCACTTGGG
AGGTGGAAGCAGTAAGACCAGAAGTTCAAGGCCATCCCCAGCTACCCAGT
AGGCTTAGCATCAGCTATGTTACATGACACCCTGTCTTAAAAAAACAAAA
TAAAAAACAGACAAAAGGTCTTATATAAATGTAGATTTACTTATTTTACC
CCAACATTCACATCTGGGGCTTCCTCTGCAAATGCTAAGTATCCGGCAAC
TCGGAGCCCACCCTGCAGCCTGGCACCAATGTGTTAGACCTTGGGAGCAG
TCAGCACTTACTTTTCCATCTATCTACCTCGATTATTTTGTGGCATGGCC
TCACTACTCTTGAGCCCCCTTGTTTCATGATCTTTTGCACACCGGGACTA
AATGTGTGTACTGTGCATTGCCAGCTTTCTGAAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no260_c08.b1 MSMg01no260_c08.b1 CHROMAT_FILE:
MSMg01no260_c08.b1 PHD_FILE: MSMg01no260_c08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:09 2005
         (373 letters)



>mm_chr2_154350328_154351100
          Length = 773

 Score =  698 bits (361), Expect = 0.0
 Identities = 370/373 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggaccctctctctattatcacagaggcatacatcaagcaggtttgatactgttggact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggaccctctctctattatcacagaggcatacatcaagcaggtttgatactgttggact 260

                                                                       
Query: 61  tggttttgttgttcattttctgggttggttttcaagatgtttctcactctgtagcgctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggttttgttgttcattttctgggttggttttcaagatgtttctcactctgtagcgctga 320

                                                                       
Query: 121 cacaaacttgcctcagcctgccactgctgagtgagattacagcccacagctaatcctgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacaaacttgcctcagcctgccactgctgagtgagattacagcccacagctaatcctgtg 380

                                                                       
Query: 181 atttttgttatgtccaatcccagtctagaaagctttggtagggggtgcacacaggccaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atttttgttatgtccaatcccagtctagaaagctttggtagggggtgcacacaggccaga 440

                                                                       
Query: 241 gcttttgtaccctgtcttgaggaggagaaatttatgctccaatggagaagattagtagcc 300
           |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 gcttttgtaccctgccttgaggaggagaaatttaggctccaatggagaagattagtagcc 500

                                                                       
Query: 301 agaaaaataggtgacatctgaactttggtgactggatgtatcctaaccatgacacttgcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 agaaaaataggtgacatctgaactttggtgactggatgtatcctaacgatgacacttgcc 560

                        
Query: 361 ctcctgagcagtg 373
           |||||||||||||
Sbjct: 561 ctcctgagcagtg 573


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)