Query= MSMg01no260_c22.b1 MSMg01no260_c22.b1 CHROMAT_FILE:
MSMg01no260_c22.b1 PHD_FILE: MSMg01no260_c22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:12 2005
(665 letters)
>mm_chr2_77251587_77252651
Length = 1065
Score = 1193 bits (617), Expect = 0.0
Identities = 646/665 (97%), Gaps = 16/665 (2%)
Strand = Plus / Plus
Query: 5 gaattctttagctttatcctagaactcttgcttgggaggtaggaagttctgcattagatc 64
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttagctttatggtagaactcttgcttgggaggtaggaagttctgcattagatc 264
Query: 65 cctagcccagccaattaaatgataaacaaacaaacaaacaaacagaattaatcacttcca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cctagcccagccaattaaatgataaacaaacaaacaaacaaacagaattaatcacttcca 324
Query: 125 gagtctagtgcccacttgtccctagaggctctcctgctgaccaccatccaacccagccag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gagtctagtgcccacttgtccctagaggctctcctgctgaccaccatccaacccagccag 384
Query: 185 ggtgccccacaaggcagggtgggggcaggagggaacttacagctaagatgcttgggctcc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ggtgccccacaaggcagggtgggggcaggagggaacttacagctaagatgcttgggctcc 444
Query: 245 gctgcagcttgttgtaggggctgtatttcggcttcagcggttttcctgccacgcggtctt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gctgcagcttgttgtaggggctgtatttcggcttcagcggttttcctgccacgcggtctt 504
Query: 305 tatgccttcggcttgaaatgtgctgaaagaagtatgtcgcattagctgactctttgtttg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tatgccttcggcttgaaatgtgctgaaagaagtatgtcgcattagctgactctttgtttg 564
Query: 365 tttcctagacaaggatagctgatttctccattcccaccttctaaggtgggttgggtacca 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tttcctagacaaggatagctgatttctccattcccaccttctaaggtgggttgggtacca 624
Query: 425 aaacaaacaaacaaacaaacaaacaaacaaacaaacaaacaaacaaactttctgttcccc 484
||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 625 aaacagacaaacaaacaaacaaacaaacaaacaaac------------tttctgttcccc 672
Query: 485 tacagagaggacgtttccttctagcccaatgtccctgtccttgtgatgttcttgagtttt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 tacagagaggacgtttccttctagcccaatgtccctgtccttgtgatgttcttgagtttt 732
Query: 545 atcagataccccctggattgccacagttaccactaagcctgtcttctgatgcactgcact 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 atcagataccccctggattgccacagttaccactaagcctgtcttctgatgcactgcact 792
Query: 605 cccttgggaacatggtgcacatctgtctgtctgtctgtctgtctgtct----ctagcact 660
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 793 cccttgggaacatggtgcacatctgtctgtctgtctgtctgtctgtctgtctctagcact 852
Query: 661 ggggc 665
|||||
Sbjct: 853 ggggc 857
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 75
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space: 691025
Effective search space used: 691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no260_c22.g1 MSMg01no260_c22.g1 CHROMAT_FILE:
MSMg01no260_c22.g1 PHD_FILE: MSMg01no260_c22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:12 2005
(616 letters)
>mm_chr2_77419309_77420325
Length = 1017
Score = 1156 bits (598), Expect = 0.0
Identities = 613/618 (99%), Gaps = 3/618 (0%)
Strand = Plus / Minus
Query: 1 tctttgtgtgctaagagctattagaagtattctcatttggttttcaccacagccttatga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 922 tctttgtgtgctaagagctattagaagtattctcatttggttttcaccacagccttatga 863
Query: 61 agtgagcactattattataatatctgcttgaggaatgagggaactattgcccttaggagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 agtgagcactattattataatatctgcttgaggaatgagggaactattgcccttaggagg 803
Query: 121 aaaataaccaaccctgtgagtctctaacgtttgagggcaagatgtcttaaaccagattct 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 802 aaaataaccaaccctgtgagtctctaacgtttgagggcaagctgtcttaaaccagattct 743
Query: 181 gagcctcttttactcctctaccatatataaaaatgaaagcatgaattgcttgaggt-atg 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 742 gagcctcttttactcctctaccatatataaaaatgaaagcatgaattgcttgaggtaat- 684
Query: 240 accttatactaatattaatactactatccttctttaataatgctcttttgatatttttat 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 accttatactaatattaatactactatccttctttaataatgctcttttgatatttttat 624
Query: 300 tgtaaaagtaacatagatattcacaaactgttatttctgaattcctcatctaaagttatg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tgtaaaagtaacatagatattcacaaactgttatttctgaattcctcatctaaagttatg 564
Query: 360 ttttggg-aaaaaataactcatacccaaattgtaatggtaagaatgatcatgagtccttc 418
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ttttgggaaaaaaataactcatacccaaattgtaatggtaagaatgatcatgagtccttc 504
Query: 419 cattttagctgaccttggcaaactgggaactgagttatgtgtacttaagaaatgctatat 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 cattttagctgaccttggcaaactgggaactgagttatgtgtacttaagaaatgctatat 444
Query: 479 gccagaatctctttacagtgatttatgacacatattaaaggcgccaagaaagtaatatat 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gccagaatctctttacagtgatttatgacacatattaaaggcgccaagaaagtaatatat 384
Query: 539 ggtattgtatccagctcataatactcaaagaatacatgcaaagtttatcatacacaatta 598
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ggtattgtattcagctcataatactcaaagaatacatgcaaagtttatcatacacaatta 324
Query: 599 tttatatgtttctggtgt 616
||||||||||||||||||
Sbjct: 323 tttatatgtttctggtgt 306
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1017
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1007
Effective search space: 610242
Effective search space used: 610242
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
