BAC Information

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BAC

Clone NameMSMg01-260E16
Chromosome2 (Build37)
Map Location 118,600,949 - 118,601,381
singlet/doubletsinglet
Overlap genenone
Upstream geneThbs1, Fsip1, Gpr176, 1700054M17Rik, Eif2ak4, Srp14, LOC668859, Bmf, LOC640461, Bub1b, Pak6, Gm1337, Plcb2, LOC100043272, A430105I19Rik
Downstream geneDisp2, D2Ertd750e, Ivd, Bahd1, Chst14, LOC677379, Ccdc32, Rpusd2, Casc5, Rad51, 1200015F23Rik, Gchfr, Dnajc17, OTTMUSG00000015762, LOC545640, Zfyve19, Ppp1r14d, Spint1, Rhov, Vps18, LOC100043609, Dll4, Chac1, Inoc1, LOC100043612, Exdl1, 1500003O03Rik, LOC100043307, Oip5, Nusap1, Ndufaf1, LOC625328, LOC100043622, Rtf1, Itpka, Ltk, Rpap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-260E16.T7 (MSMg01no260_e16.b1)MSMg01-260E16.TJ (MSMg01no260_e16.g1)
ACCAG402996AG402997
length825745
length of high quality
(start - end)
158 (49 - 206)433 (73 - 505)
definitionCHROMAT_FILE: MSMg01no260_e16.b1 PHD_FILE: MSMg01no260_e16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:21 2005CHROMAT_FILE: MSMg01no260_e16.g1 PHD_FILE: MSMg01no260_e16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCGTTTAGTTCGCAGGCAAGGTTTATGTCAACTGGACACAAGCT
AGAGCCATCAGAGGAGGGAGCCTTAATTGAGAAGATGCCTTCCTACAATC
TTGCTATAAGGCATCTTCCTTCCTTCCTTCCTTCCTCCCTCCCTCCCTCC
CTCCCTTCCCCCCTTCTTTCTCTTTCTCTTTTTCCCCGCCCCCGTTTTCT
CTCTTCTTTCCTTTGACGACCTCGCTCCTGTCGTGCTAGTCTCCTTATAT
TTCTGACTTCCGGCTCCGACCCTTTTTTTTTTTCTATCCACCTTCCCCCG
CACCCCTTTTTTTTTATTTTTTTCCCCCCCCCCCCCCCTCTTCGCATATG
TTTCTTGCGTGTGTTTTTCCCCCCCCGGGGGAGAAAAGAATTTTTCCTTC
CGCGTTACCGTGCCGATACTTCGCACTTTCCCCCACTTCCCCCCGCCACC
TTATTTTATTACTTTATTACTACTCACCCGCCTCTCCCTACATCTCTCTA
TCCCGTCTCCCTCCACCCCTTTTCCTATTGCTTCTCCCCTCTTTTTTGAC
TTTTTTTCCCCCCCTTCCGCCCCGTTTCTTTCTATCCTTTCTCTTCCCGG
CAATCTCTTCTGCCCATTCCTCATTCTATCTTATTTCCGCTTTATAGCTC
GGCTACATTTGCCGCTTAGCTTATCTGCTCTATTCCGACTTCCGCCGATT
ACTTCTTATTTCGCCCCTTTATCCTCGCCCCGCTTCCTTTCGCACCTGTT
AATCGCCGTCATTCCCCCTAACCTT
ATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTGCTGGACAGTAAGGCAGAGTGAAGTG
AGAGAGATCTCCAAGCAGCAGACAGCAAGGGCAGAGACCCAGAGCCGAGA
CCAGAAGGTTGTAACCAGGATATAAGGAGAAGCCAGCACAGAGCTCTGAG
GGGCTATAAGCAGATGTTCAGGAATGAATGGGGGAGGCTGGCTGGGGCCC
AGACAGAGACAGAAGAAGAGGAAGAATTGGGGTTTACCACAATAGCATGT
CTCCCAAGTGCCCTGAAATTTGACCTAGGTTAGGAGGGCAGACCACTGGC
AGTGTGGACAAAACCTTAACCTCCTACCTGGCCCTGTGCCACCCAGGGGA
CTCAGCCAGCTCTTGACCCCACAGGGATGCACAAGTAAGCTTTGTATTGA
CTTTCAATATGAATCTGCTGTTAGTGGATGAATGAAGGAATAACTGTCAG
GCAAGTGGCCAAGTCTGAGGAGCTGTGGTGGGGGCAGGAGTGAACACAGG
AACTAGCATCGGAGAAGAGGCAGGGGCAAGTTGTCCCCTTCAAAACCAAA
GGACTGACACCACTCTCTTTTCCCCCTTTCTCTCTAACAGGTGGCAAGGT
AGGCACATTCTCGAGCCTTCCTCCCTCCCCTTCTTTGTGTCCCCCCCCCC
CCGGCTGCTTCTTTTCGATCTCTTCCCTCCTTTCTTGGACCAGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no260_e16.g1 MSMg01no260_e16.g1 CHROMAT_FILE:
MSMg01no260_e16.g1 PHD_FILE: MSMg01no260_e16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:21 2005
         (433 letters)



>mm_chr2_118600749_118601581
          Length = 833

 Score =  822 bits (425), Expect = 0.0
 Identities = 431/433 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgctggacagtaaggcagagtgaagtgagagagatctccaagcagcagacagcaagggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgctggacagtaaggcagagtgaagtgagagagatctccaagcagcagacagcaagggc 260

                                                                       
Query: 61  agagacccagagccgagaccagaaggttgtaaccaggatataaggagaagccagcacaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagacccagagccgagaccagaaggttgtaaccaggatataaggagaagccagcacaga 320

                                                                       
Query: 121 gctctgaggggctataagcagatgttcaggaatgaatgggggaggctggctggggcccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctctgaggggctataagcagatgttcaggaatgaatgggggaggctggctggggcccag 380

                                                                       
Query: 181 acagagacagaagaagaggaagaattggggtttaccacaatagcatgtctcccaagtgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagagacagaagaagaggaagaattggggtttaccacaatagcatgtctcccaagtgcc 440

                                                                       
Query: 241 ctgaaatttgacctaggttaggagggcagaccactggcagtgtggacaaaaccttaacct 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgaaatttgaccaaggttaggagggcagaccactggcagtgtggacaaaaccttaacct 500

                                                                       
Query: 301 cctacctggccctgtgccacccaggggactcagccagctcttgaccccacagggatgcac 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 cctacctggccctgtgccacccaggggactcagccagctcttgagcccacagggatgcac 560

                                                                       
Query: 361 aagtaagctttgtattgactttcaatatgaatctgctgttagtggatgaatgaaggaata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagtaagctttgtattgactttcaatatgaatctgctgttagtggatgaatgaaggaata 620

                        
Query: 421 actgtcaggcaag 433
           |||||||||||||
Sbjct: 621 actgtcaggcaag 633


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space:   349376
Effective search space used:   349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)