BAC Information

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BAC

Clone NameMSMg01-260F19
Chromosome2 (Build37)
Map Location 161,933,050 - 162,115,335
singlet/doubletdoublet
Overlap genePtprt
Upstream geneChd6, LOC100043693, LOC100043694, LOC383769, LOC629655, LOC383770
Downstream geneLOC100043895, LOC100043896, LOC100043696, LOC497655, LOC668947, Sfrs6, L3mbtl, LOC241765, Sgk2, Ift52, Mybl2, 2410116G06Rik, LOC269389
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-260F19.T7 (MSMg01no260_f19.b1)MSMg01-260F19.TJ (MSMg01no260_f19.g1)
ACCAG403049AG403050
length749765
length of high quality
(start - end)		635 (71 - 705)415 (75 - 489)
definitionCHROMAT_FILE: MSMg01no260_f19.b1 PHD_FILE: MSMg01no260_f19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:26 2005CHROMAT_FILE: MSMg01no260_f19.g1 PHD_FILE: MSMg01no260_f19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:56:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(161,933,050 - 161,933,684)(162,114,921 - 162,115,335)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTTACAAGTCCCACTGCAGAAGTCCATGGAAGTTTATATAAGCAGTG
TGCTCTGGAATGGGGCACTGTTACAACCTTACCACACGGGTCATGCAGAA
CACTCTGTCCCCTCGTTATTCACCCATCACTAGAGTGATCTAAACAGAAT
TTCTCATGCTGTGGTCTCGCCATGTCCTCCAAACTGAATTCATTGACACA
TATTCTTAACCTGATCAAAGTCCATCTTTATCAAAGATCACTAGAATCCT
CAGAATCAAACGGATATGATCACTGGACAAACCAATAATGCCCTTGCTCC
TTGTAATTATCTGAGGAACCAAGGGCTTTATCTACCGTAAAAAGTGTTTG
TTGAGTGGAAGGAGATATAGCGCTCCCTTAATTTCCTCTGAAGTTAGAGA
CAACCAAGCTGAGTTAGTATGAGAATCTACTTAACACTCAAGGGTCTGAA
GCACAAAGCAGTGAGTGCCTTACTTCTGCTCCTGGATGCAGGCAAGGTTT
ACTTACCTCAGGTCTATACCTGTCATGCAGAAGGATGTGAATGAAAGCAG
TAAGTGGCCATAACTAACTGTTGGCCCCTTACAAAGAATGCTCCCATTTG
CTTATATCTCATTGATAANAACTTAGTTATATGGTCGTACTCAACTGCAT
GGGGTCCTGCGAAATGTAGTCTTTTAGCCATTACCAGATAAAGATCCAA

NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTAGTGATGTTATTGTAGGTGCTCAGG
GACCGTAGTCGGGGATCCATGGGCAAATAAACATGCTCTTTAGGGGTCAG
TTGGGAAGGATATTCATGGCTTCATGGTATCTCCTAGGACTCTTGACTGT
ATAAACAGTGAGAAAAGATAAGACTTGCTTACTCTGCATAGGATCAATTA
GCTTATGTTTGACACTCATAGGATAGCTCAGAGATTCTTATACTGACCAT
GAAAGTGTAGTAGTTAATATTGAATCTTTATAATACATTCAGTTTTTATA
AAAGAATAAGTAATATAGGTGTTACTATTACCTTCATCCCCTCCATTTTA
CAGATAAATAAACTGAGGGAAGAAATTATGGAGCTTGAGGAAATTGCCAA
AGGAGATCTAGCTGGGAGATGGTAGGGTTGGGATTGGATGTTCACCCCTA
TATACATATCCCCCATTCCCTTACCATTCCTTATTTGCTGCCACCCTGCC
TACTATTTGAAGCCCCACCTAATCTTAAGAGAGTTTTTAAAGTCCTTTGT
AATTTTCCCTTGCCTTCCCTTCATATCTTATATCATGTAAACTTCCCGTT
CACCTTTTTTACGCCTATTCCCAAATAATCTTTTATTCGTCGCCTTCATT
AATTCCTCCCTTCTTTTTTTACTCACCGTTTTCTCACTTTCTTTATTCTA
TTTTCACACGCTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no260_f19.b1 MSMg01no260_f19.b1 CHROMAT_FILE:
MSMg01no260_f19.b1 PHD_FILE: MSMg01no260_f19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:26 2005
         (635 letters)



>mm_chr2_161932850_161933884
          Length = 1035

 Score = 1222 bits (632), Expect = 0.0
 Identities = 634/635 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaagtccatggaagtttatataagcagtgtgctctggaatggggcactgttacaacctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agaagtccatggaagtttatataagcagtgtgctctggaatggggcactgttacaacctt 260

                                                                       
Query: 61  accacacgggtcatgcagaacactctgtcccctcgttattcacccatcactagagtgatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accacacgggtcatgcagaacactctgtcccctcgttattcacccatcactagagtgatc 320

                                                                       
Query: 121 taaacagaatttctcatgctgtggtctcgccatgtcctccaaactgaattcattgacaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaacagaatttctcatgctgtggtctcgccatgtcctccaaactgaattcattgacaca 380

                                                                       
Query: 181 tattcttaacctgatcaaagtccatctttatcaaagatcactagaatcctcagaatcaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tattcttaacctgatcaaagtccatctttatcaaagatcactagaatcctcagaatcaaa 440

                                                                       
Query: 241 cggatatgatcactggacaaaccaataatgcccttgctccttgtaattatctgaggaacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cggatatgatcactggacaaaccaataatgcccttgctccttgtaattatctgaggaacc 500

                                                                       
Query: 301 aagggctttatctaccgtaaaaagtgtttgttgagtggaaggagatatagcgctccctta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aagggctttatctaccgtaaaaagtgtttgttgagtggaaggagatatagcgctccctta 560

                                                                       
Query: 361 atttcctctgaagttagagacaaccaagctgagttagtatgagaatctacttaacactca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atttcctctgaagttagagacaaccaagctgagttagtatgagaatctacttaacactca 620

                                                                       
Query: 421 agggtctgaagcacaaagcagtgagtgccttacttctgctcctggatgcaggcaaggttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agggtctgaagcacaaagcagtgagtgccttacttctgctcctggatgcaggcaaggttt 680

                                                                       
Query: 481 acttacctcaggtctatacctgtcatgcagaaggatgtgaatgaaagcagtaagtggcca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acttacctcaggtctatacctgtcatgcagaaggatgtgaatgaaagcagtaagtggcca 740

                                                                       
Query: 541 taactaactgttggccccttacaaagaatgctcccatttgcttatatctcattgataana 600
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 741 taactaactgttggccccttacaaagaatgctcccatttgcttatatctcattgataaaa 800

                                              
Query: 601 acttagttatatggtcgtactcaactgcatggggt 635
           |||||||||||||||||||||||||||||||||||
Sbjct: 801 acttagttatatggtcgtactcaactgcatggggt 835


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space:   640625
Effective search space used:   640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no260_f19.g1 MSMg01no260_f19.g1 CHROMAT_FILE:
MSMg01no260_f19.g1 PHD_FILE: MSMg01no260_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:56:26 2005
         (415 letters)



>mm_chr2_162114844_162115658
          Length = 815

 Score =  787 bits (407), Expect = 0.0
 Identities = 413/415 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagtgatgttattgtaggtgctcagggaccgtagtcggggatccatgggcaaataaacat 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 492 tagtgatgttattgtaggtgctcagggaccgtagtcggggacccatgggcaaataaacat 433

                                                                       
Query: 61  gctctttaggggtcagttgggaaggatattcatggcttcatggtatctcctaggactctt 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 432 gctctttaggggtcagttgggaaggatattcatggcttcatagtatctcctaggactctt 373

                                                                       
Query: 121 gactgtataaacagtgagaaaagataagacttgcttactctgcataggatcaattagctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gactgtataaacagtgagaaaagataagacttgcttactctgcataggatcaattagctt 313

                                                                       
Query: 181 atgtttgacactcataggatagctcagagattcttatactgaccatgaaagtgtagtagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 atgtttgacactcataggatagctcagagattcttatactgaccatgaaagtgtagtagt 253

                                                                       
Query: 241 taatattgaatctttataatacattcagtttttataaaagaataagtaatataggtgtta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 taatattgaatctttataatacattcagtttttataaaagaataagtaatataggtgtta 193

                                                                       
Query: 301 ctattaccttcatcccctccattttacagataaataaactgagggaagaaattatggagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 ctattaccttcatcccctccattttacagataaataaactgagggaagaaattatggagc 133

                                                                  
Query: 361 ttgaggaaattgccaaaggagatctagctgggagatggtagggttgggattggat 415
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ttgaggaaattgccaaaggagatctagctgggagatggtagggttgggattggat 78


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space:   327236
Effective search space used:   327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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