BAC Information

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BAC

Clone NameMSMg01-260N20
Chromosome2 (Build37)
Map Location 52,805,832 - 52,969,000
singlet/doubletdoublet
Overlap geneFmnl2
Upstream geneNmi, Tnfaip6, Rif1, Neb, LOC100041670, Arl5a, Cacnb4, OTTMUSG00000012638, Stam2
Downstream genePrpf40a, Arl6ip6, LOC666872, LOC666876, LOC207933, Rprm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-260N20.T7 (MSMg01no260_n20.b1)MSMg01-260N20.TJ (MSMg01no260_n20.g1)
ACCAG403409AG403410
length731733
length of high quality
(start - end)		612 (46 - 657)619 (80 - 698)
definitionCHROMAT_FILE: MSMg01no260_n20.b1 PHD_FILE: MSMg01no260_n20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:05 2005CHROMAT_FILE: MSMg01no260_n20.g1 PHD_FILE: MSMg01no260_n20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:57:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,968,616 - 52,969,000)(52,805,832 - 52,806,450)
sequence
NAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCG
CGGAATTCAAGAACTGTCCTACCTAGTGCTACCTACAGGGATAGACAGAC
ACCTCAGAACAGAGCTGCCCAGGATCACAGGAACAGATCGCCACCTCAGG
GCAGAGCTACCCAATAGTCCAGAGTGGCAACTTCAGAGCAGTGCTAGTGA
ATTGGTTCCTTCTTTTAGTTTGTTTGTTACTGTCAACTAGACACAGGTTA
AGAGTCACCTTGGCAGAAGAAGCATCAATTGAGAAAATGCCTCCATTAGA
TTGACTTGTAAGCAAGATGTAAGGCAATTCACTGATTACTGACTGATGTC
AGACGTTCCAGCTCATTTTGAGCCCTGTCACCCCTAGGTGTAAGAAAGCA
GGCTGAGCAAACAATAGGCACCAAGCTAGTAAGCAACATGTCTCCATGGC
CTCTGCATCAGCTCCTGCCTCCTGCTTCCTGCCTTGAGACCCTGCCCAAA
TTTCTCTCCATGCTAATCTGTAAGCTAAAGTAAACCCTCTCCTTCCCAAG
TTGCCTTGCTTATGGTGTTTATCACACAGCAATAACCAACAGCAAACTAA
GACTGTGGTGCAGTATCACTGGGAAAGCCTCTCAATAGCAGAGCTGCCTG
GTGTCACGTGGTGGCAGCCTCTGAGCAGGAACTAACAACACCTCAGAGGG
GACTGACTTAGTATGGAAGAGACTGCTATTC

NNCCCGAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGGTCAGCCCAGCTGCAGG
CTTAGCGTTAATTTGATTCTAATCCCCAGGTCCGCCCCTCTGGGCACCTG
AAGTCTTGTTTTTCACACCCACAAACACATGCTTAGTACCGCCCAACAGG
TTTCTGCATTCAGCATCTGGAGGGTGTGCTTAAAGACAGGGCGCGTTGGA
ACATTTGTCAACATCTTAAGTAGACAGATGAGAGCTACATCCTAGAAGGT
GTCCTTATAGTATATACTGTGTCATGCCTCTGTGGCGAACTGGGGTCATG
TGGTTAGAGTTCTTTACCCAGATGTCTGTATACAAGTATATACCCTCATG
CTTTTCTTATACCCCTGTTCAAAGACAAGTGGGATAGACTTCAGAACAAG
CTTTGGGGATTTAAGCTCTGCATACACCTTTAATAAAGATATGGATGCAT
TCCTCCAACTACAGTTTGGCGTCACTTTCTGTTCTGTCATTTGTGCTTAG
GACCTGTCACCATGCATGACATAAAACCTGAGTGTTGAGATTTCCCATAT
ACTCAGTGGGATTCATACTGTATTTTGGTAGAACCGAGTGAGGCCAAATA
AAATTGGCTAAAAATTCCCATTAAATGATGGTGCATTCTGCGTCAGTAAA
AGATAAAAGGAAATGAAGGGCCTCCTATAGCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no260_n20.b1 MSMg01no260_n20.b1 CHROMAT_FILE:
MSMg01no260_n20.b1 PHD_FILE: MSMg01no260_n20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:05 2005
         (612 letters)



>mm_chr2_52968616_52969627
          Length = 1012

 Score =  690 bits (357), Expect = 0.0
 Identities = 378/385 (98%)
 Strand = Plus / Minus

                                                                       
Query: 11  ttcaagaactgtcctacctagtgctacctacagggatagacagacacctcagaacagagc 70
           ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttcaagaacagtactacctagtgctacctacagggatagacagacacctcagaacagagc 326

                                                                       
Query: 71  tgcccaggatcacaggaacagatcgccacctcagggcagagctacccaatagtccagagt 130
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 325 tgcccaggatcacaggaacagatcgccacctcagggcagagctacccaatagtccagagc 266

                                                                       
Query: 131 ggcaacttcagagcagtgctagtgaattggttccttcttttagtttgtttgttactgtca 190
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggcaacttgagagcagtgctagtgaattggttccttcttttagtttgtttgttactgtca 206

                                                                       
Query: 191 actagacacaggttaagagtcaccttggcagaagaagcatcaattgagaaaatgcctcca 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 actagacacaggttaagagtcaccttggcagaagaagcatcaattgagaaaatgcctcca 146

                                                                       
Query: 251 ttagattgacttgtaagcaagatgtaaggcaattcactgattactgactgatgtcagacg 310
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 145 ttagattgacttgtaagcaagatgtaaggcaattcactgattactgactgatttcagacg 86

                                                                       
Query: 311 ttccagctcattttgagccctgtcacccctaggtgtaagaaagcaggctgagcaaacaat 370
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85  ttccagctcattttgagccctgtcacccctaggtgtaagaaagcaggctgagcaaacaat 26

                                    
Query: 371 aggcaccaagctagtaagcaacatg 395
           ||| | |||||||||||||||||||
Sbjct: 25  agggagcaagctagtaagcaacatg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space:   603204
Effective search space used:   603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no260_n20.g1 MSMg01no260_n20.g1 CHROMAT_FILE:
MSMg01no260_n20.g1 PHD_FILE: MSMg01no260_n20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:57:05 2005
         (619 letters)



>mm_chr2_52805632_52806650
          Length = 1019

 Score = 1135 bits (587), Expect = 0.0
 Identities = 611/619 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttggtcagcccagctgcaggcttagcgttaatttgattctaatccccaggtccgcccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttggtcagcccagctgcaggcttagcgttaatttgattctaatccccaggtccgcccct 260

                                                                       
Query: 61  ctgggcacctgaagtcttgtttttcacacccacaaacacatgcttagtaccgcccaacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgggcacctgaagtcttgtttttcacacccacaaacacatgcttagtaccgcccaacag 320

                                                                       
Query: 121 gtttctgcattcagcatctggagggtgtgcttaaagacagggcgcgttggaacatttgtc 180
           |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 321 gtttctgcattcagcatctggagggtgtgcttaaagacggggcacgttggaacatttgtc 380

                                                                       
Query: 181 aacatcttaagtagacagatgagagctacatcctagaaggtgtccttatagtatatactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacatcttaagtagacagatgagagctacatcctagaaggtgtccttatagtatatactg 440

                                                                       
Query: 241 tgtcatgcctctgtggcgaactggggtcatgtggttagagttctttacccagatgtctgt 300
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtcatgcctctgtggcgcactggggtcatgtggttagagttctttacccagatgtctgt 500

                                                                       
Query: 301 atacaagtatataccctcatgcttttcttatacccctgttcaaagacaagtgggatagac 360
           ||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 atataagtatataccctcatgcttttcttatacccctgtttaaagacaagtgggatagac 560

                                                                       
Query: 361 ttcagaacaagctttggggatttaagctctgcatacacctttaataaagatatggatgca 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 561 gtcagaacaagctttggggatttaagctctgcatacacctttaataaagatatggacgca 620

                                                                       
Query: 421 ttcctccaactacagtttggcgtcactttctgttctgtcatttgtgcttaggacctgtca 480
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 621 ttcctccaactacagtttggcgtcgctttctgttctgtcatttgtgcttaggacctgtca 680

                                                                       
Query: 481 ccatgcatgacataaaacctgagtgttgagatttcccatatactcagtgggattcatact 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccatgcatgacataaaacctgagtgttgagatttcccatatactcagtgggattcatact 740

                                                                       
Query: 541 gtattttggtagaaccgagtgaggccaaataaaattggctaaaaattcccattaaatgat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtattttggtagaaccgagtgaggccaaataaaattggctaaaaattcccattaaatgat 800

                              
Query: 601 ggtgcattctgcgtcagta 619
           |||||||||||||||||||
Sbjct: 801 ggtgcattctgcgtcagta 819


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space:   614481
Effective search space used:   614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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