BAC Information

Click to search

BAC

Clone NameMSMg01-261O01
Chromosome2 (Build37)
Map Location 67,589,259 - 67,754,569
singlet/doubletdoublet
Overlap genenone
Upstream geneScn7a, LOC383707, LOC100039540, Gm1322, Cmya3, LOC621171
Downstream geneLOC227995, B3galt1, Stk39, LOC100039683, Gm1323, 4933409G03Rik, 4932414N04Rik, LOC667443, Lass6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-261O01.T7 (MSMg01no261_o01.b1)MSMg01-261O01.TJ (MSMg01no261_o01.g1)
ACCAG404136AG404137
length758735
length of high quality
(start - end)		578 (42 - 619)558 (76 - 633)
definitionCHROMAT_FILE: MSMg01no261_o01.b1 PHD_FILE: MSMg01no261_o01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:22 2005CHROMAT_FILE: MSMg01no261_o01.g1 PHD_FILE: MSMg01no261_o01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:58:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,753,996 - 67,754,569)(67,589,259 - 67,589,816)
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTACATATGATACCAGGAAATTCTGAAGTGGATAAATTTTGTGACTGCTC
ATTAGATATTTGGTGAATTAATACCATCTTAAAAATATTCATTAGACTTT
TGGGGAAATGTAAAACTGTTGGTGTTGATTTGGTAAGTATTTAATAAGTA
TCCACTAAGGGCAATGTCTAGTGCACAGTGCTAGCATGTTCCAGTTTGTT
CATTCAGTATCTGACTAATGGGGCATAAAGGGTAGAATGAGAAGATAGAA
ACTGACTATCAGAAACTATGCTTTCCAAAGTCTCAGAGTAAAATAGTGAG
GGTTGCTTGGATCTTTTCTCAATAGGAGAGGATGACTTTTTGTCTCTCAA
TTGTTTTTATATTCACAATTAATAAGGGCATATAAATATATATAATACAA
AATATTATATATGTATCAATTAATATGTACTATAAAATATTATATAAATA
TATACAATATAATACANAATATATACAATATAATACAAAATCTATTACAT
ATAATATATTATAAAATAATATAAATATAAAATATTATATATATTAAATA
TACAAACCTAAAATCTAATAAGAATATAATATAAACATAAAATATAATTT
GTAATTATTTATATTATATTTATAAATAATATATAATATATGTGTAAAAT
ATTTATATGGTTATTACATATAAATTATATGAATATAGACACAATTTATG
GCTCATAN

TTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAGGATGGGAAGAATCGTGAGATCT
TCACATCACTGTTTTCCATAGCAAGGAGGTCAGGAGCTAAGTAAAGGAAA
AAGAGAACTCTGGGGGGTGGGAGGAAATAGACTATTATTTGTGATTCAAA
GACAATATTGTTGTAAACCTGCATACAGTCAATCCCAGAGGGGGTTGAGC
TTACAGCAGTAACTATTGATAAGTTCCTTCCCCAGAACAGGAGGGAGGAG
GTAGGAGGCATCTTAGTAACACGAATAGTTCCTGAGAAGAGCCACGGGTA
GCTCTTCTCTGGCCCCAGTTTCATTGTTGGTCCATTTGTTCTTCTCCTCC
ATCTTGTCCAGTGACAACACATCACTTTGACCACACATAGAACCTATAAC
TGGGTGTCGTCAAACATGTCCTAAATGTTAGAAATGTATAGCAGCTTGTC
AGAGTCCACTGTGATGTGAAGGGATGACTCTGGATTTGATTGGTTCCCAT
GTTGAAAAGAACCTGGCACACTGACTCACATTGGAAGTTTCCGAGAAGAT
AATTTTCAGCTTTCAGGAAGAAAATCAGCCAACAGTAAAGGATAGGGATT
ATAGGGAATGAACAGGAAATGCAATTAGCATGCTAATTAGCTAATTAAAC
GATAACACACCTGAATTGTACTATCCCGGTGAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no261_o01.b1 MSMg01no261_o01.b1 CHROMAT_FILE:
MSMg01no261_o01.b1 PHD_FILE: MSMg01no261_o01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:22 2005
         (578 letters)



>mm_chr2_67753982_67754959
          Length = 978

 Score = 1073 bits (555), Expect = 0.0
 Identities = 569/574 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctacatatgataccaggaaattctgaagtggataaattttgtgactgctcattag 64
           ||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 gaattctacatatgaaattaggaaattctgaagtggataaattttgtgactgctcattag 529

                                                                       
Query: 65  atatttggtgaattaataccatcttaaaaatattcattagacttttggggaaatgtaaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 atatttggtgaattaataccatcttaaaaatattcattagacttttggggaaatgtaaaa 469

                                                                       
Query: 125 ctgttggtgttgatttggtaagtatttaataagtatccactaagggcaatgtctagtgca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 ctgttggtgttgatttggtaagtatttaataagtatccactaagggcaatgtctagtgca 409

                                                                       
Query: 185 cagtgctagcatgttccagtttgttcattcagtatctgactaatggggcataaagggtag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 cagtgctagcatgttccagtttgttcattcagtatctgactaatggggcataaagggtag 349

                                                                       
Query: 245 aatgagaagatagaaactgactatcagaaactatgctttccaaagtctcagagtaaaata 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 aatgagaagatagaaactgactatcagaaactatgctttccaaagtctcagagtaaaata 289

                                                                       
Query: 305 gtgagggttgcttggatcttttctcaataggagaggatgactttttgtctctcaattgtt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 gtgagggttgcttggatcttttctcaataggagaggatgactttttgtctctcaattgtt 229

                                                                       
Query: 365 tttatattcacaattaataagggcatataaatatatataatacaaaatattatatatgta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 tttatattcacaattaataagggcatataaatatatataatacaaaatattatatatgta 169

                                                                       
Query: 425 tcaattaatatgtactataaaatattatataaatatatacaatataatacanaatatata 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 168 tcaattaatatgtactataaaatattatataaatatatacaatataatacaaaatatata 109

                                                                       
Query: 485 caatataatacaaaatctattacatataatatattataaaataatataaatataaaatat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 caatataatacaaaatctattacatataatatattataaaataatataaatataaaatat 49

                                             
Query: 545 tatatatattaaatatacaaacctaaaatctaat 578
           ||||||||||||||||||||||| ||||||||||
Sbjct: 48  tatatatattaaatatacaaacccaaaatctaat 15


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space:   549824
Effective search space used:   549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no261_o01.g1 MSMg01no261_o01.g1 CHROMAT_FILE:
MSMg01no261_o01.g1 PHD_FILE: MSMg01no261_o01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:22 2005
         (558 letters)



>mm_chr2_67589059_67590016
          Length = 958

 Score = 1025 bits (530), Expect = 0.0
 Identities = 551/558 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggatgggaagaatcgtgagatcttcacatcactgttttccatagcaaggaggtcagga 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaggatgggaagaatcatgagatcttcacatcactgttttccatagcaaggaggtcagga 260

                                                                       
Query: 61  gctaagtaaaggaaaaagagaactctggggggtgggaggaaatagactattatttgtgat 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 gctaagtaaaggaaaaagagaactctggggggtggggggaaatagactattatttgtgat 320

                                                                       
Query: 121 tcaaagacaatattgttgtaaacctgcatacagtcaatcccagagggggttgagcttaca 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 tcaaagacaatattgttgtaaacctgcatacagtcaatcgcagagggggttgagcttaca 380

                                                                       
Query: 181 gcagtaactattgataagttccttccccagaacaggagggaggaggtaggaggcatctta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcagtaactattgataagttccttccccagaacaggagggaggaggtaggaggcatctta 440

                                                                       
Query: 241 gtaacacgaatagttcctgagaagagccacgggtagctcttctctggccccagtttcatt 300
           ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct: 441 gtaacacgaatagttcctgagaaaagccacggggagctcttctctggccccagtttcatt 500

                                                                       
Query: 301 gttggtccatttgttcttctcctccatcttgtccagtgacaacacatcactttgaccaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttggtccatttgttcttctcctccatcttgtccagtgacaacacatcactttgaccaca 560

                                                                       
Query: 361 catagaacctataactgggtgtcgtcaaacatgtcctaaatgttagaaatgtatagcagc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 catagaacctataactgggtgtcgtcaaacatgtcctaaatgttagaaatgtatagcagc 620

                                                                       
Query: 421 ttgtcagagtccactgtgatgtgaagggatgactctggatttgattggttcccatgttga 480
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttgtcagagtccactgcgatgtgaagggatgactctggatttgattggttcccatgttga 680

                                                                       
Query: 481 aaagaacctggcacactgactcacattggaagtttccgagaagataattttcagctttca 540
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaagaacctggcacactgtctcacattggaagtttccgagaagataattttcagctttca 740

                             
Query: 541 ggaagaaaatcagccaac 558
           ||||||||||||||||||
Sbjct: 741 ggaagaaaatcagccaac 758


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space:   519504
Effective search space used:   519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |