TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCCAGGATCCGCGGAAT
TCAAACCTAGGTGTGCGTGATTCCAAAGATCGCTGCCTAATTTTCATTCT
TTTCCTTGTGACTCCAGGTTTCATTCCCAATGTGTCACTGACTGTGAGCA
TCCTCAGCTGTTGCCAGGTTGGCCTCAAGCTTTTACCGGCGGAAAACCTG
ACCACTATCTCTAACCACATTCAAAGCTCCAATGCTAATTCCTTTGTATG
CAATACCATCTTCATCCCATTGAAGTGACTGGGAAGCACAGAAAAGCCAC
GGGCGCATTTATCTCCTGGCTTCTCTCATACTCAATCAACCTTTAAGCCA
TATTAGTTTTCCCTCTTCAGTGTTGTTCAATTAAAACACATTTTTCTGTG
TAAAGTTCTGTTACTTTACATGACACTACTGTAAGCTCTTGTCTTACCCC
CCGTGGTAGTTTCCTTTGGCTATGGCCTCTTATGGCTCCCATGTGTTTTC
CACAGAAAGCCAGGGAGATCCTGTACATACTGAAGTCAATCACCCTTATT
CAAGCTGAAGTCCTTGCTCTCTCTAAATATTTCAACAGTGCTTTCTATCA
CTCTGAGTACAAAGATCAGAGTCTGTAACAGGACCTAAAATACCACCTCG
GGCTGACTCTTGTGTCCTTGCCATGACTTCGCATGCTGTGAGACCTTTTC
TCCTGCTCTCTTCAATTTAGCTTCAAAGAG

CACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAGAAGTAGAATTTAATGCC
AGTGAAAGAATGGACTTCCTGGCAAGGCAAGAGCAAGCAGGCAAAGATCA
AAAAGTTCCTTCTTCCATGTCTTTCTATAGACTTCCAGCTGAAGGCATGG
CTCAGACTATAGGTGGATCTTTCTCAAAAGACCTGGATTAAAGGTATTTC
TTCCTTCAAAGATCTGGATTACAAAGGGATTTCTCCACTTTACATTAAGC
AAGAAACATTCACAGGTGTGCTCCTTCATTTGTTGAGTTTTAGTTAACTC
CAGATGTAATCAAGTTGACAACCAAGAATAGCCATCACAATGAATGTGAG
TACACATGTCAGTTTTTGTGCATGCACAAGCCAGAGGAAACACTTCTGTC
TTCCTCTATCATTCATTGCTTTGTTGGCTTGAGGCAGTGCCACTCGCTAA
CCTGGAAGTTTACAGATTTGGCCAGGATGGCTGACAAGATCCTTCTGTTT
ATGCTTGCCAATTCTGGGGTTAGCTATACTCATAAGCATGCCTGTCATTT
TCCATTGATGCTAGGAATTCAGACACAGATAATCAGTCTTACACAGCAAT
CTCTCTTACCCAACGAAGCTCTCACCCTAGCTCTAAGACCTAAATATTTA
CACGGTTCTTTGTCTGTTTAACTN

Query= MSMg01no262_e03.b1 MSMg01no262_e03.b1 CHROMAT_FILE:
MSMg01no262_e03.b1 PHD_FILE: MSMg01no262_e03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:58:51 2005
         (581 letters)



>mm_chr2_53907602_53908581
          Length = 980

 Score = 1009 bits (522), Expect = 0.0
 Identities = 562/576 (97%), Gaps = 3/576 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   ggaattcaaacctaggtgtgcgtgattccaaagatcgctgcctaattttcattcttttcc 66
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 207 ggaattcaaacctaggtgtgtgtgattccaaagatcgctgcctaattttcattcttttcc 266

                                                                       
Query: 67  ttgtgactccaggtttcattcccaatgtgtcactgactgtgagcatcctcagctgttgcc 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ttgtgactccaggtttcattcccaatgtgtcactgactgtgagcatcctcagctgttgcc 326

                                                                       
Query: 127 aggttggcctcaagcttttaccggcggaaaacctgaccactatctctaaccacattcaaa 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aggttggcctcaagcttttaccggcggaaaacctgaccactatctctaaccacattcaaa 386

                                                                       
Query: 187 gctccaatgctaattcctttgtatgcaataccatcttcatcccattgaagtgactgggaa 246
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gctccaatgctaattccttcgtatgcaataccatcttcatcccattgaagtgactgggaa 446

                                                                       
Query: 247 gcacagaaaagccacgggcgcatttatctcctggcttctctcatactcaatcaaccttta 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gcacagaaaagccacgggcgcatttatctcctggcttctctcatactcaatcaaccttta 506

                                                                       
Query: 307 agccatattagttttccctcttcagtgttgttcaattaaaacacatttttctgtgtaaag 366
           |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 507 agccatgttagttttccctcttcagtgttgttcaattaaaagacatttttctgtgtaaag 566

                                                                       
Query: 367 ttctgttactttacatgacactactgtaagctcttgtcttaccc-cccgtggtagtttcc 425
             ||||||||||| |||| ||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 567 ggctgttactttagatgagactactgtaagctcttgtcttgccctcccgtggtagtttcc 626

                                                                       
Query: 426 tttggctatggcctcttatggctcccatgtgttttccacagaaagccagggagatcctgt 485
           |||||||||||||||  |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 627 tttggctatggcctc--atggctcccatgtgttctccacagaaagccagggagatcctgt 684

                                                                       
Query: 486 acatactgaagtcaatcacccttattcaagctgaagtccttgctctctctaaatatttca 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 acatactgaagtcaatcacccttattcaagctgaagtccttgctctctctaaatatttca 744

                                               
Query: 546 acagtgctttctatcactctgagtacaaagatcaga 581
           |||||||||||||||||||| |||||||||||||||
Sbjct: 745 acagtgctttctatcactctaagtacaaagatcaga 780


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 980
Length adjustment: 10
Effective length of query: 571
Effective length of database: 970
Effective search space:   553870
Effective search space used:   553870
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)