Query= MSMg01no262_g15.b1 MSMg01no262_g15.b1 CHROMAT_FILE:
MSMg01no262_g15.b1 PHD_FILE: MSMg01no262_g15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:04 2005
(300 letters)
>mm_chr2_3598622_3599321
Length = 700
Score = 549 bits (284), Expect = e-161
Identities = 298/306 (97%), Gaps = 6/306 (1%)
Strand = Plus / Minus
Query: 1 atcagtttggagtctgaaccaatttgatgtaagccattgttactgaaggcccacccgagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 464 atcagtttggagtctgaaccaatttgatgtaagccattgttactgaaggcccaacagagc 405
Query: 61 aggctactggtgagatgctgctggcagatagttctacatttcccatccatatctgcctct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 aggctactggtgagatgctgctggcagatagttctacatttcccatccatatctgcctct 345
Query: 121 tccatttatgtgcaacttggcctgtgcaacggtttatcttaatgtacttgggatgggact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 tccatttatgtgcaacttggcctgtgcaacggtttatcttaatgtacttgggatgggact 285
Query: 181 ctcatatttactgaaaaaatatctccacattccttgggagataaatgaatgaaagtagga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ctcatatttactgaaaaaatatctccacattccttgggagataaatgaatgaaagtagga 225
Query: 241 ctatataattgcttcctcgatatatgtgtgtgtgtgtgtgtgt------atgtatacaca 294
||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 224 ctatataattgcttcctcgatatatgtgtgtgtgtgtgtgtgtgtgtgtatgtatacaca 165
Query: 295 tataca 300
||||||
Sbjct: 164 tataca 159
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 700
Length adjustment: 9
Effective length of query: 291
Effective length of database: 691
Effective search space: 201081
Effective search space used: 201081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no262_g15.g1 MSMg01no262_g15.g1 CHROMAT_FILE:
MSMg01no262_g15.g1 PHD_FILE: MSMg01no262_g15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:04 2005
(524 letters)
>mm_chr2_3435254_3436178
Length = 925
Score = 924 bits (478), Expect = 0.0
Identities = 512/526 (97%), Gaps = 8/526 (1%)
Strand = Plus / Plus
Query: 1 ggagagaggatgtgtgcattagtgatgtcac-tccttgctgtgaccaaattcctgactaa 59
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 206 ggagagaggatgtgtgcattagtgatgtcacat--ttgctgtgaccaaattcctgactaa 263
Query: 60 aactcaaagaaggaaagatttattcttcctcccacagttggggagaacgtggaccagggg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aactcaaagaaggaaagatttattcttcctcccacagttggggagaacgtggaccagggg 323
Query: 120 ccacgcctggaggatcaaattctctctctaccgctgaccctgcaggtcaggtgatgtttc 179
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 324 ccacgcctggaggatcaaattctct----accgctgaccctgcaggtcaggtgatgtttc 379
Query: 180 tttggctcagtctctctatctgtaaagagaggataataaagtatctatgtcatagctttg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tttggctcagtctctctatctgtaaagagaggataataaagtatctatgtcatagctttg 439
Query: 240 ttgtgaaacttgaatgagttaaaatatatgaaatgcttgcatcatagccagcccctgcca 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttgtgaaacttgaatgagttaaaatatatgaaatgcttgcatcatagccagcccctgcca 499
Query: 300 gctcctgccagctcctgccaaatgttaacatggcggctgctcatgccttgcctatcctga 359
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 500 gctcctgccagctcctgccaaatgttaacatggtggttgctcatgccttgcctatcctga 559
Query: 360 gtcctgtctcccagctcaaaagaattgggactgagtatggttcttcaagttaggatttaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gtcctgtctcccagctcaaaagaattgggactgagtatggttcttcaagttaggatttaa 619
Query: 420 ctactgatatgcataaagtatggtttaaaaaaaaaa-cccaatagataaggtttccacca 478
|||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||
Sbjct: 620 ctactgatatgcataaagtatggtttaaaaaaaaaaacccaacagttaaggtttccacca 679
Query: 479 aacccagcctcatgatggtggaacataatacttgcgcatgataaag 524
||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 680 aacccagtctcatgatggtggaacataatacttgtgcatgataaag 725
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 925
Length adjustment: 10
Effective length of query: 514
Effective length of database: 915
Effective search space: 470310
Effective search space used: 470310
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
