BAC Information

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BAC

Clone NameMSMg01-262I07
Chromosome2 (Build37)
Map Location 85,097,019 - 85,097,447
singlet/doubletsinglet
Overlap genenone
Upstream geneCalcrl, Tfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55
Downstream geneOlfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262I07.T7 (MSMg01no262_i07.b1)MSMg01-262I07.TJ (MSMg01no262_i07.g1)
ACCAG404597AG404598
length758742
length of high quality
(start - end)
433 (46 - 478)611 (72 - 682)
definitionCHROMAT_FILE: MSMg01no262_i07.b1 PHD_FILE: MSMg01no262_i07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:11 2005CHROMAT_FILE: MSMg01no262_i07.g1 PHD_FILE: MSMg01no262_i07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAATTTTATGTTTCACGTACTATGTGGGGGCATCATCATCACACAG
GGAGAATCAATTGTTAACTCTCTAACCTCTCTGCCCTTCCTTCGAGTTTG
GGATGTGGGATTGTTGGATCCAAGTTTTTAATTATTAATTTGATCTTTCT
AATGACCGACCCCTTTTCAGAAACCCAAGAACTGCCCATTATAATACAAG
ATATTCCTGTCAACCTTCAAATTTAGAAACTTTATGTCAGGAAACTGGGG
TAATGGTCAAACATTAGAACAAAAGATGCTTCGAGAACCTATTATAGGGA
TTATAACAGATTTCAGAATTTTTGTGAAAAGAATAGGGAATGGAACACAT
GATAGTCTCTCATAGTAGCGTACTACTTCATACAGTTGTGGTGGGTGATG
TTTAGGCTTGTTCTTCTAATCTTGATTGTGCCCAGCAGTCTTCAGAACAG
GACTTCCAGCCAGTCCAAGGGTTGCTAAGGATCATGGACCAGAACTACCT
ACTAGCTTGCCTTTAGCTATAGCATCAGATGACTCCNTCTCCTGGTTTTA
CGTAGAAGGGAAATTTTTCGTTTTCCTGCCATCCCTTGCCAGTGCCTTAA
AGTTGGCGAAGTGGCTTGAAAGATTTTGTCCCCTATAATCGGCAGTTGGT
AAATTGTGTCAATCTTTTTCATTATTTTTCCACCTTTTGTTCTTCTGCTT
TATTTAAT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCACCAGAGACTATGAAAGCTAGATGTCA
TACTAGAGGAGTTATTTTTTAAAAAGTGCTACAGCCTGTGAGGGGCTGGG
ACAGCTCTACTGCTCTCACCCTCTCAGGAATGACTCACCTGTGCTTTTGC
CATTAGGGCCACCTCTACTGTGCTGCCCAAGTGAGGTGCAGGGGCTGCCT
TCCAAGTATTCCACTGGGTGAGGGAGGTCAGCCCACCTACTCTCATGACC
TCAGGGCCAGTCCTCAGAACAATGGTGGTAAGAGGGAAAAGAAGGGGGAA
GGGCATTACCCTGGCACCCATGCAATTACCCTGACACCTCTGATAGTAGC
AGGACAGCTCTCCCTCATTCTCACCCTTGAGGCTGACTCACCAGTGCTCC
GTGCCCCAAGGATCAGCTCTGTTAGGCTGTCCAGGCAAGATGCAGGGCTT
GTTCTCCGAGGTGCTGCAGATGGTAAGGGACAGGGCTAGCTCTCCCAAAC
TCAAGACCCTGTGAGCATCTTTGCCATCTGACGAAAGGTGGAGAGGGTAA
TGGGGTGGTATCATCTCTGCACTTTTGCCAATCAACAGCAGATGAGTAAC
AGGGTCAGCTCTCCTGCCCCACCACCAGGACCAGCTCCACAGGGCCCACT
CTTTAAATTGCTGCCAGGAGTGAGAGATGGGCCCAGCATTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_i07.b1 MSMg01no262_i07.b1 CHROMAT_FILE:
MSMg01no262_i07.b1 PHD_FILE: MSMg01no262_i07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:11 2005
         (433 letters)



>mm_chr2_85096815_85097647
          Length = 833

 Score =  799 bits (413), Expect = 0.0
 Identities = 425/429 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaattttatgtttcacgtactatgtgggggcatcatcatcacacagggagaatca 64
           ||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaattttatgttccaggtactatgtgggggcatcatcatcacacagggagaatca 264

                                                                       
Query: 65  attgttaactctctaacctctctgcccttccttcgagtttgggatgtgggattgttggat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attgttaactctctaacctctctgcccttccttcgagtttgggatgtgggattgttggat 324

                                                                       
Query: 125 ccaagtttttaattattaatttgatctttctaatgaccgaccccttttcagaaacccaag 184
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 325 ccaagtttttaattattaatttgatctttctaatgaccaaccccttttcagaaacccaag 384

                                                                       
Query: 185 aactgcccattataatacaagatattcctgtcaaccttcaaatttagaaactttatgtca 244
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aactgcccattataatataagatattcctgtcaaccttcaaatttagaaactttatgtca 444

                                                                       
Query: 245 ggaaactggggtaatggtcaaacattagaacaaaagatgcttcgagaacctattataggg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggaaactggggtaatggtcaaacattagaacaaaagatgcttcgagaacctattataggg 504

                                                                       
Query: 305 attataacagatttcagaatttttgtgaaaagaatagggaatggaacacatgatagtctc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 attataacagatttcagaatttttgtgaaaagaatagggaatggaacacatgatagtctc 564

                                                                       
Query: 365 tcatagtagcgtactacttcatacagttgtggtgggtgatgtttaggcttgttcttctaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcatagtagcgtactacttcatacagttgtggtgggtgatgtttaggcttgttcttctaa 624

                    
Query: 425 tcttgattg 433
           |||||||||
Sbjct: 625 tcttgattg 633


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space:   349376
Effective search space used:   349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)