BAC Information

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BAC

Clone NameMSMg01-262J14
Chromosome2 (Build37)
Map Location 9,398,989 - 9,399,153
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040710
Downstream geneLOC100040548, LOC100040566, Gata3, LOC100040768, 4930412O13Rik, Taf3, Atp5c1, Kin, Itih2, Itih5, Sfmbt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-262J14.T7 (MSMg01no262_j14.b1)MSMg01-262J14.TJ (MSMg01no262_j14.g1)
ACCAG404655AG404656
length783849
length of high quality
(start - end)
43 (77 - 119)166 (71 - 236)
definitionCHROMAT_FILE: MSMg01no262_j14.b1 PHD_FILE: MSMg01no262_j14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:17 2005CHROMAT_FILE: MSMg01no262_j14.g1 PHD_FILE: MSMg01no262_j14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCCAAAATCCGCGGAA
TTCCTGCTCCTCTCTCGCATGACAAACAGCCATCTGAGATGAGGAGCTCT
GCCTGAGCCTCATCTTAAGTGTGATGAAAAGTGAACTATAATATTTGTGG
ATGGCTCTGGGGAAGGCCAGGAGAGATGACCAGCTTGTTTTGGCCATTGT
TTGAACTTCTAATCACTATCATCTGATACATCCACTGACTTATTTAACAC
CCTTTATGCTGTAAAATCTTGTTAGCTTTCGTGCCCCCACTCTGTGCATT
GCACCCCGTTTTGCCCCCGTTTTTTTTCATACAACGAACGCCCAAATCTA
TTATCTATACATGAATGCACGACCCCTCCCTCATCCTTTATTTAACTCTT
CCGACTGTTTAACTTTCCTCTCCCCCCCCTACTATGTTTCCTTCTTCCGA
TTTTTTCCGCCTAACCCCTACTCACTAACTCATTTTATTTTTGACACTTC
TCTCTACCCCCCCCCTAATCCCCCTCCTCCCCCCTACTTGAATCCCCCCT
TAGATATTCTTTACACCCCACTATTGTTTTTTTTCCATCTAAACTCTCTT
TTACTTTTGTCCGTGCTCCCCACCCCGCATTTATTTCATACCTCTTCCCG
TCCCCCCCCCTACCTGCAATTTCTCTTTTCTTCGTCCCCTCCCCCCCACT
TTTCTTATTTTATCCTCTCCTCTTTTCTCATTCTGCGTACACTTCTTATC
CCTCTGTCCCAATCCACCTCCCCTTTACGTTTT
GATGCTGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTGCCGNAATCAGTGCAATCTTCCTACTTAACAGGAGGAT
TACAGAGATCATAGGCAAGAACCACCACTCCCGGCATTGCCGGGTTCTTT
GACAGTTGATTTATTGGTGTCAGTCCAAGCTACTTAGTTTCTCCCTAAGT
TGCCAAATGTATCGCTTATAAAAACACAAGGTCCATAGGGCGGTATGAAA
GTGGTCTCTTTATAATTGTGTTATATTGCAGTCACAATAATTTCCCTGTA
CCATCATTTGGCAAAAAAATCCCACGGAATGGGGTGCTTTATTTTCCTTT
CGGGGATTACTCGACAGAGTACACAAATATCATTATTTCATTGATGTACT
ACTCACCTATTTATCATTCCATTTCCCCCTATCTTCTACTTTTCTTCCNA
ATTTATCTACTCATCCTCCTTCTCCTTTTCCCNNCNCCNCNTTTCNCCCC
CCCCCCCACCTACATACCTGCATTTTAAATACATGGCGNNNNNNAACCTN
NNNNNNNNNNNCCCNCCAACCTANNNNNNTTCNNNNTTTTNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCNNNCCTTTT
NCTGCCNNNNNNNNNNNNNNNTTAANGCTCATCTACTCATCATGTAGNNN
NNNTANAANNNNNCCCTCCCCAATTTATACTACNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCCTGAACNNTAGNNTAA
NNNNNNNNNNNNNNNNNNTGNNNNNNNNCCTTNNCNNNNCCTTTNNCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no262_j14.g1 MSMg01no262_j14.g1 CHROMAT_FILE:
MSMg01no262_j14.g1 PHD_FILE: MSMg01no262_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:17 2005
         (166 letters)



>mm_chr2_9398789_9399354
          Length = 566

 Score =  304 bits (157), Expect = 2e-87
 Identities = 163/165 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtgcaatcttcctacttaacaggaggattacagagatcataggcaagaaccaccactc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtgcaatcttcctacttaacaggaggattacagagatcataggcaagaaccaccactc 260

                                                                       
Query: 61  ccggcattgccgggttctttgacagttgatttattggtgtcagtccaagctacttagttt 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccagcattgccgggttctttgacagttgatttattggtgtcagtccaagctacttagttt 320

                                                        
Query: 121 ctccctaagttgccaaatgtatcgcttataaaaacacaaggtcca 165
           |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 ctccctaagttgccaaatgtatcgtttataaaaacacaaggtcca 365


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 566
Length adjustment: 8
Effective length of query: 158
Effective length of database: 558
Effective search space:    88164
Effective search space used:    88164
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)