Query= MSMg01no262_m21.b1 MSMg01no262_m21.b1 CHROMAT_FILE:
MSMg01no262_m21.b1 PHD_FILE: MSMg01no262_m21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:32 2005
(663 letters)
>mm_chr2_62838195_62839257
Length = 1063
Score = 1172 bits (606), Expect = 0.0
Identities = 655/692 (94%), Gaps = 33/692 (4%)
Strand = Plus / Plus
Query: 5 gaattctaatggttcttccatttggataagattttattctatttctgactcaaactgtca 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 gaattctaatggttcttccatttggataagattttattctatttctgactcaaactgtca 231
Query: 65 tgtaatcatataatctttttttt-cttctcaaaagtaagttgctttagccagtttgcgtg 123
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 232 tgtaatcatataatctttttttttcttctcaaaagtaagttgctttagccagtttgcgtg 291
Query: 124 tgacacttcgttgatccttccttctttccttttccttccttccttccttttccttccttc 183
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 292 tgacacttcgttgatccttccttctttccttttcctttcttccttccttttccttccttc 351
Query: 184 cttttccttccttctttccatccttccatatatatatatatatata-------------- 229
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 cttttccttccttctttccatccttccatatatatatatatatatatatatatatatata 411
Query: 230 ------------------ctcttgaacaaaaatctgcacattgatgttctccaacataat 271
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 tatatatatatatatatactcttgaacaaaaatctgcacattgatgttctccaacataat 471
Query: 272 gtagttatcacattatatgtcacaagtccatctttaataaactggtcatcagagtttttt 331
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 gttgttatcacattatatgtcacaagtccatctttaataaactggtcatcagagtttttt 531
Query: 332 agagttttcttttttacagatagaatctatataggtctctatacaactggatgcttcctc 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 agagttttcttttttacagatagaatctatataggtctctatacaactggatgcttcctc 591
Query: 392 ttgtggcctgactgtgttccttcagcagggcctgtggaacaaagcaatgattcaccttgt 451
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 atgtggcctgactgtgttccttcagcagggcctgtggaacaaagcaatgattcaccttgt 651
Query: 452 acttgcttcttcagagagatgtctgcttgacagactgtcactggatcatcccgtccttgt 511
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 652 acttgcttcttcagagagatgtctgcttgacagactgtcactggatcatcctgtccttgt 711
Query: 512 gaaaaacaagacccttcagttataagtggtcaaacaactaggtcttgttctctaacccat 571
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 gaaaaacaagacccttcagttataagtggtcaaacaactaggtcttgttctctaacccat 771
Query: 572 ttgaatagttagagagttgatatgctatctgctaatatattgtccaaatatacacatctt 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 ttgaatagttagagagttgatatgctatctgctaatatattgtccaaatatacacatctt 831
Query: 632 aaattttaaaatatgaggaagtctgatacatc 663
||||||||||||||||||||||||||||||||
Sbjct: 832 aaattttaaaatatgaggaagtctgatacatc 863
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 71
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space: 687609
Effective search space used: 687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no262_m21.g1 MSMg01no262_m21.g1 CHROMAT_FILE:
MSMg01no262_m21.g1 PHD_FILE: MSMg01no262_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:32 2005
(631 letters)
>mm_chr2_63004884_63005913
Length = 1030
Score = 1042 bits (539), Expect = 0.0
Identities = 600/637 (94%), Gaps = 29/637 (4%)
Strand = Plus / Minus
Query: 1 acacgcacacacacacctgaaatgtaacaaaagtaatgaagaaagaagcatgattttgaa 60
|||| |||||||||||| |||||||||||||| |||||||||| ||||||||||||||||
Sbjct: 941 acactcacacacacacccgaaatgtaacaaaaataatgaagaaggaagcatgattttgaa 882
Query: 61 agatcagcaggcatgtatatgagagggtttggactgagaaaacagaagggataaatcata 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 881 agatcagcaggcatgtatatgggagggtttggactgagaaaacagaagggataaatcata 822
Query: 121 tactgcaatctcaataaataaataaataaaataatttcaaagaaagaacagaacatccag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 tactgcaatctcaataaataaataaataaaataatttcaaagaaagaacagaacatccag 762
Query: 181 tttcctgttacaatttattaagtcatatgccttcccttgtttttgtttt------gtttt 234
||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 761 tttcctgttacaatttattaagtcatatgccttcccttgtttttgtttttgttttgtttt 702
Query: 235 gttttgttttgttttgtttttgtctttttgggtttttttgcatgtgtacataacagaact 294
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 701 gttttgttttgttttgtttttgtctttttgggtttttttgcatgtgtacataaaagaact 642
Query: 295 ttctacaaccaatgaaattcattatccataactctatcaacagaaaagtaagaaccatgg 354
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 641 ttctacaaccactgaaattcattatccataactctatcaacagaaaaataagaaccatgg 582
Query: 355 ctgtaatagatactatcaaaatgttcatgtttgtatttataaaaatcacaattcttgaca 414
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 581 ctgtaatagatactatcaaaatgttcatgtttgtatttataaaa-tcacaattcttgaca 523
Query: 415 cgtagtgagtgcagtatgagttaacatatacaatgtgaaaaggaataaagttaaaaactc 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 cgtagtgagtgcagtatgagttaacatatacaatgtgaaaaggaataaagttaaaaactc 463
Query: 475 atgtaacaaaaaaaaaaactcatgtaacactatcaaattcgagagggaatgcgtaatctc 534
|||||||| |||||||||||||||||||||||||||||||
Sbjct: 462 atgtaaca---------------------ctatcaaattcgagagggaatgcgtaatctc 424
Query: 535 acctgtgactgaataaaaaatatgaaaaataattatgactccagtaagtaaaaataaaac 594
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 423 acctgtgactgaataaaaaa-atgaaaaataattatgactccagtaagtaaaaataaaac 365
Query: 595 tagcatgatttttgttaaactatgttatccctgggac 631
|||||||||||||||||||||||||||||||||||||
Sbjct: 364 tagcatgatttttgttaaactatgttatccctgggac 328
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 7
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1030
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1020
Effective search space: 633420
Effective search space used: 633420
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
