BAC Information

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BAC

Clone NameMSMg01-263B06
Chromosome2 (Build37)
Map Location 143,063,339 - 143,063,637
singlet/doubletsinglet
Overlap geneLOC668915
Upstream geneLOC668913, LOC668914, Kif16b, Snrpb2, Otor
Downstream geneLOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik, LOC627160, EG433481
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263B06.T7 (MSMg01no263_b06.b1)MSMg01-263B06.TJ (MSMg01no263_b06.g1)
ACCAG404999AG405000
length738763
length of high quality
(start - end)
292 (76 - 367)504 (77 - 580)
definitionCHROMAT_FILE: MSMg01no263_b06.b1 PHD_FILE: MSMg01no263_b06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:53 2005CHROMAT_FILE: MSMg01no263_b06.g1 PHD_FILE: MSMg01no263_b06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:59:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGAT
CCGCGGAATTCAGTCAGAATCCCTCTACTCCAACAGAATTGGGCCCCTGC
ATGCAGGAATTGTTCAATAAATGCTATTTGCTTTTGCATACTTTTTGAGT
CTGGGGTATCATTCTTCAGCTATTTATGGACCCTAACAATCCTCTTTCCA
TCTTTCTCTTACATCTGCTTCCGTGATGTAAGCACCGCCCCCCCCATCAA
TGCTTCCACCACCATGAGCCATATGGGATGTCCTCCCAACCTTTCTTCCC
TTCAGTTTTTTTTTTCTGTCAGGCATTTTGGTTACAGCAACACAAAAATA
GCTAATACAAGTGACTTATTTAGGACTATGCTGCAACCCAGCTGTCTGTC
ATATTATGATTTGGTCAACCCCCCCCACCTAAGGGTCACCTAGGGAAACT
TCACGTATGTTCTTATTACTGGAAGATGTAGGAAAACCTGCTCTGAGGGG
TCTTAGCTCTGTATAGAACAATAATTCAAAATAGATTCAGGTGATAACTC
ACGGAAAATTTTATTGACATTTGAGAAGGAAAACAGCGGTCATGACAGCT
AGAGTTTTTAGAATAAAGGTATGAGGTATAAGTCCCTGAATATAAGCCCA
TGTTCGATTCACTATCTTTCCGGTCCTACCTTTTTATATTGATTTTCCTC
TCTCCTGTTTTTTGCTTCCATATTTTTTTCTTTTTTCG
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCCCTGAAAAATGCATGATAAAA
CAAAATACCCATGAAAGGAGTTACAGAGACAAAGTTTGGAGCTGGGACGA
AAGGATGGACTATCCAGAGACTACCCCACCCAGGGATCCATCCCATAATC
AGCCACCAAACCCAGACACTATTGCATATGCCAGAAAGATTTTGCTGAAG
GAACCCTGTTAGAACTGTCTCATATGAGGTTATACCAGTGCCTGGCAAAT
ACAGAAGTGGATGCTCACAGTCATCTATAAGAAGGGCCCCCAATGGAGAA
GCTAGAGAAAGCACCCAAGGAACTGAAGGAATCTGCAAACCTATGGGTGG
AACAACAATATGAACTAACCAGTACTCCCAGAGCCCATATCTCTAGCTGC
ATATGTAGCAGAAGATAGCCTAGTCAGCCATCACTGGGAAGAGAGGCCCC
TTGGTATTGCAAACTTTATATGCCCCAGCACAGGGGAATGCCAGGGCTAG
AAGCGGGAGTGGGTGGGTAGGGGAGCAGNNTATTTTGNTGTTTTATTTTG
GTTGTTTGTTGCGTGATTTTTTTGGTTTATTTTGTCTTTGTTAGTTCTTT
GGTGGTTTTTCTTTTCTGTCGCCTTCCTTCGGTCTTCAACTATATAGTGA
GACTCCTATTACGCTCGGCGCTTGTGAGTTCTGCTGCTTCCTCGTTTATG
TTCACATTCATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_b06.b1 MSMg01no263_b06.b1 CHROMAT_FILE:
MSMg01no263_b06.b1 PHD_FILE: MSMg01no263_b06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:59:53 2005
         (292 letters)



>mm_chr2_143063139_143063831
          Length = 693

 Score =  513 bits (265), Expect = e-150
 Identities = 288/299 (96%), Gaps = 7/299 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tactccaacagaattgggcccctgcatgcaggaattgttcaataaatgctatttgctttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tactccaacagaattgggcccctgcatgcaggaattgttcaataaatgctatttgctttt 260

                                                                       
Query: 61  gcatactttttgagtctggggtatcattcttcagctatttatggaccctaacaatcctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcatactttttgagtctggggtatcattcttcagctatttatggaccctaacaatcctct 320

                                                                       
Query: 121 ttccatctttctcttacatctgcttccgtgatgtaagcaccgcc-ccccccatcaatgct 179
           ||||||||||||||||||||||||||| ||||||||||||| || |||||||||||||||
Sbjct: 321 ttccatctttctcttacatctgcttccatgatgtaagcacccccaccccccatcaatgct 380

                                                                       
Query: 180 tccaccaccatgagccatatgggatgtcctcccaacctttcttcccttcagttttttttt 239
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccaccaccatgagccatatgagatgtcctcccaacctttcttcccttcagttttttttt 440

                                                                      
Query: 240 t------ctgtcaggcattttggttacagcaacacaaaaatagctaatacaagtgactt 292
           |      ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 tttttttctgtcaggcattttggtcacagcaacacaaaaatagctaatacaagtgactt 499


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 693
Length adjustment: 9
Effective length of query: 283
Effective length of database: 684
Effective search space:   193572
Effective search space used:   193572
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)