BAC Information

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BAC

Clone NameMSMg01-263D03
Chromosome2 (Build37)
Map Location 101,087,436 - 101,087,598
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042907, LOC241572, LOC668705
Downstream geneB230118H07Rik, Rag2, Rag1, LOC100042930, Traf6, 2600010E01Rik, LOC100043302, Commd9, Ldlrad3, LOC674202
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-263D03.T7 (MSMg01no263_d03.b1)MSMg01-263D03.TJ (MSMg01no263_d03.g1)
ACCAG405085AG405086
length734740
length of high quality
(start - end)
163 (457 - 619)296 (79 - 374)
definitionCHROMAT_FILE: MSMg01no263_d03.b1 PHD_FILE: MSMg01no263_d03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:02 2005CHROMAT_FILE: MSMg01no263_d03.g1 PHD_FILE: MSMg01no263_d03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:00:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCGAAAGATGC
GCGGAATTCAATATAATTTTCTTCAAAATTCCATTTTACTTTTATCAGTA
TACACCAACAAACAAACAACATATTAGGCACTTGCGTCACCTACTTATTC
TGAATTTATTTGCTTAATTCCACATTCCATAGATCTTTAAGAGGAAATGC
TAGGAATAAAGCCTGGCCATCACCCAGCGTGATAATATTTATACTTAATT
AAAAAAATAACAGCAATGTTATTTACAGTGTGACGTGAGCTAATGCAATA
GAAGGAAGAGTGTCACTGGGCTATNCTACTTGCTTGCCTGTCTTGGAGTC
CAGACTGGTGTCTGTGNGTTCTCTCCCGNACTTCCCCCTCACAACTACAG
TAAGTGACACAGCCTAAGTACTACCAGAAAAAAAAGAAACACTCAGCACC
TGTGGCTCTCATCTTACAATCATCCAGGGGAAAGGGGCTTAGACATTCAC
TGAGTTGAGTAACTTAAGATGACAACGGAAGCACTGTCCTGGGCCTAGTC
TTAAGATAATGTCCCCTGTGGGAACTGAAGGAGGCAGACATGCTTATGGG
CTGCTGCCAGCAGGGAAAGGTTTTTTCCCATTCTAAGTAGCTTAGGCAGG
TTTATTCAGACATCTGCTTCCCCAGCAAGAGCATTCCTGCTAAGGCTGAG
TTTTCATTTCTCCCCGGAAGTATCCTCCTGACAC
CCCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCATAGACTACTTTGATCAGTTA
TGTATCTCTGTATTAACCATCCTCTACTGCATAAATGTGCTTCTCTGATG
AGAATTGAAAGCTGCACTAATCTCCGAGTATAAGAATATATGTTCAGAAG
GTAGTTATAGAAAATGTCAGTTTAGGAAGATAATAGCTGTAGGTTTACCT
CTAGGATCTAAGAGCTCCCAAGTAATGGTTCTTGGATGGAATTACAGTAG
TAGACACGGATTTCTCTTCTGTTTTGGGCCTTAAATCTAATCAGAAAACA
ATTGGTTACCCCTGATTTTTATGTTACCATCCCACCATATCTTGATAGAA
TAGCCATTACTGTAGCTGACCCGGTTCATAGCTGGATAAGACTATTGATT
CTTAATAGCGTTCTCACGCCCGGCCAGGAAGAACACAACAGACCAGAATC
TTCTGCGGCAAAACTTTATTGCTTACATCTTCAGGAGCTAGGAGCGCAAA
TCCCCAGCCCCAAAAGCGAAAGCCCCTTCTATCTTACATCTTTAGGAGCC
AGAGCTCCGGCGCGCCAAAGCGCAGAGCGCGCTCTATTGTTTACATCTTT
AGGCAGCGAGCGAGCGCAGGGCGCGCAGAGCCAGAGAGATGCCAGCGAGA
GAGAATGGCGGAAAACCCCGTCCCCTTTAGGAGGAGTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no263_d03.b1 MSMg01no263_d03.b1 CHROMAT_FILE:
MSMg01no263_d03.b1 PHD_FILE: MSMg01no263_d03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:02 2005
         (163 letters)



>mm_chr2_101087236_101087798
          Length = 563

 Score =  315 bits (163), Expect = 7e-91
 Identities = 163/163 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctcatcttacaatcatccaggggaaaggggcttagacattcactgagttgagtaactta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctcatcttacaatcatccaggggaaaggggcttagacattcactgagttgagtaactta 260

                                                                       
Query: 61  agatgacaacggaagcactgtcctgggcctagtcttaagataatgtcccctgtgggaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agatgacaacggaagcactgtcctgggcctagtcttaagataatgtcccctgtgggaact 320

                                                      
Query: 121 gaaggaggcagacatgcttatgggctgctgccagcagggaaag 163
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaggaggcagacatgcttatgggctgctgccagcagggaaag 363


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 163
Length of database: 563
Length adjustment: 8
Effective length of query: 155
Effective length of database: 555
Effective search space:    86025
Effective search space used:    86025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)