Query= MSMg01no263_i19.b1 MSMg01no263_i19.b1 CHROMAT_FILE:
MSMg01no263_i19.b1 PHD_FILE: MSMg01no263_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:30 2005
(321 letters)
>mm_chr2_104160299_104161019
Length = 721
Score = 557 bits (288), Expect = e-163
Identities = 308/316 (97%), Gaps = 3/316 (0%)
Strand = Plus / Minus
Query: 5 gaattcactatgtaacctatgctaaccttgaactcacggtgattctcctgcctcctcagc 64
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 603 gaattcactatgtaacctatgctaaccttgaactcacggtgattctcctg---cctcagc 547
Query: 65 cttctaagtattgggactccagatgttagatatattaggtactatgctagctgaggatga 124
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 cttctaagtattgggactacagatgttagatatattaggtactatgctagctgaggatga 487
Query: 125 agttttagtgacccagggccactgaccaggccaatgacaggaatcctacaaggcataggc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 486 agttttagtgacccagggccactgaccaggccaatgacaggaatcctacaaggcacaggc 427
Query: 185 aaggaggttgtcgctaagcacagtcttacagtcttagaccgtagcacacaagaagagagc 244
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 426 aaggaggttgttgctaagcacagtcttacagtcttagaccgtagcatacaagaagagagc 367
Query: 245 taagccgcctccttctctggaggagccttctcacagtctctgaggcagaacctgagccca 304
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 366 taagccgcctccttctctggaggagccttctcacagcctctgaggcagaacctgagccca 307
Query: 305 aggggtggacacgtgt 320
||||||||||||||||
Sbjct: 306 aggggtggacacgtgt 291
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 721
Length adjustment: 9
Effective length of query: 312
Effective length of database: 712
Effective search space: 222144
Effective search space used: 222144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no263_i19.g1 MSMg01no263_i19.g1 CHROMAT_FILE:
MSMg01no263_i19.g1 PHD_FILE: MSMg01no263_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:00:30 2005
(544 letters)
>mm_chr2_104008275_104009218
Length = 944
Score = 1029 bits (532), Expect = 0.0
Identities = 538/540 (99%)
Strand = Plus / Plus
Query: 5 gacaggagctgtcggctaggttttacaggagctgttgtcgtcttccggtctccacagcta 64
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 205 gacaggagctgtcggctaggttttacaggagctgttgtcgtcttcaggtctccacagcta 264
Query: 65 caccagtgtggcagacttgctaattagcataataatgagaaatggctttcactgattaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caccagtgtggcagacttgctaattagcataataatgagaaatggctttcactgattaaa 324
Query: 125 ttaacggcattctcaaaaaatctttgatgcctttgggtataagaatctggagcaccgtgt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttaacggcattctcaaaaaatctttgatgcctttgggtataagaatctggagcaccgtgt 384
Query: 185 agcctataccccaaaggccggcaaatcgctataaatgagcctgggtccagccattgatta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agcctataccccaaaggccggcaaatcgctataaatgagcctgggtccagccattgatta 444
Query: 245 gggaattgttggttccgtgactccatttattacggggagcaacgcaatcttccttctaca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gggaattgttggttccgtgactccatttattacggggagcaacgcaatcttccttctaca 504
Query: 305 tacagatgatctacaagtataatgtgacatgaatgaacagctctgaatggggccgggtgt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tacagatgatctacaagtataatgtgacatgaatgaacagctctgaatggggccgggtgt 564
Query: 365 cctgttttcatgagcatgccacaggattcagatgtctgctcaagcttgagatctattgat 424
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 565 cctgttttcatgagcatgccacaggattcagatgtctgctcaagcttgaaatctattgat 624
Query: 425 ctagaccgttctctttcacctgcctctgtgagcagggtagataactgagtcccattagca 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctagaccgttctctttcacctgcctctgtgagcagggtagataactgagtcccattagca 684
Query: 485 ttcggagaagtccccatggactgacatcttaggttgcctattgatgaaggtatgtttagt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttcggagaagtccccatggactgacatcttaggttgcctattgatgaaggtatgtttagt 744
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 944
Length adjustment: 10
Effective length of query: 534
Effective length of database: 934
Effective search space: 498756
Effective search space used: 498756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
