BAC Information

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BAC

Clone NameMSMg01-264B08
Chromosome2 (Build37)
Map Location 68,207,331 - 68,207,639
singlet/doubletsinglet
Overlap geneStk39
Upstream geneCmya3, LOC621171, LOC227995, B3galt1
Downstream geneLOC100039683, Gm1323, 4933409G03Rik, 4932414N04Rik, LOC667443, Lass6, Nostrin, Spc25, G6pc2, Abcb11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264B08.T7 (MSMg01no264_b08.b1)MSMg01-264B08.TJ (MSMg01no264_b08.g1)
ACCAG405729AG405730
length742901
length of high quality
(start - end)
312 (46 - 357)249 (124 - 372)
definitionCHROMAT_FILE: MSMg01no264_b08.b1 PHD_FILE: MSMg01no264_b08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:11 2005CHROMAT_FILE: MSMg01no264_b08.g1 PHD_FILE: MSMg01no264_b08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTTTTTTTCTTTGTAAAATTAACATTTGGACATTGGTAACTTAG
AATTAAATGGGCTAAAAAACCACAATAAAATATAAAGATAACTCTATTAC
ATACTGCTCTTACTTCAAAAGAGTTTAGATGAAACCCAAGACATTTTCTA
TTCTGGGATTTTGAAATGTGTTTATGTTTTCAGTGCAATTAAAGGAAACG
GCGACTTTTTGTACCTGTTTAGTAGAAAACATCCTATGGTTTGGTGAGCT
TGCCTGGCCCATGGTCTCTGATAGCATGCTCTGCAGGGTAGAGAATGGCA
GGTGGCAGATTTTTTTTCAAGCCTCCCCCCCCCTCTGAGACGCTCCACGA
GTGTGTTTACAGTCCATCCATCACTACCTAGGACTCAGCAGGGAGAGATG
GGAATTGATATCAGAATTGATGAGCCACGTGGAACATAAAATAAGGTGGA
TTTTTTTTTGTTGTTGTTGTTGTTGACGCCTCCTCCCCCCTTTCCTCTTT
CCCTTTTCTCTACCCTCCCCTCTTCTTATTTCACCCCTCCTACCCCTACC
TACTTCTTATATTTTTTAAACTCCATCACTTATAATAAAATCACCCCCTT
ATCCCACTTTGTACCCCTCTCCACTACTCTCCTACTACGAATCCTGTTCA
GTTACATAGTTCTTTGTCCACCTACCTCTCACTTCTTATCTN
NTTTCCCCCTCCCCCCTTTTNCTTCTCTCTTTTTTTNNNNNNNTTTTACT
ATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAG
AAGCACCTGAAAAAATGCTCAACATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCGTGGATTTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAGATC
AGTCTGGCGGTTCCTCAGAAAACTGTATATAGTACTACCGGAGGATCCAG
CAATACCTCTCCTGTTTTTTTATCCCCACCACCGCCCCAACTGGTAAGAT
AGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAAAATCCAGAA
ACTGGCAAGAACCCAGATGCCCCTCATCAGACTAATGGATACTAAACATG
TGGCTACTTCTTACCCTATGGTATTACAACTCAAGCTATTAATAAGAAAT
GATTTTATGGATATTTCTCTGTTTCAATTGTTATGGAACCTGGATGCTCT
TCCTTCCCTGAATTGTATTTACACCTTTTTCCAAACAGCAACCCCACACA
AATAATGCTACCTCTCTGGAATACATTTGAACTTCAAGCCCTCCCACATC
CCTAATCATACCCTCCTGAAATATAAATAATACAATTCTTCCCTTATCAC
TCTTTGTATACCTCCACTTATTAACTTCGCATATTCCTGTATAACGGCGT
AAACTCATTAATAGTATCCTTTCCCTCATATATCATTGGGGGATACAAAC
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_b08.b1 MSMg01no264_b08.b1 CHROMAT_FILE:
MSMg01no264_b08.b1 PHD_FILE: MSMg01no264_b08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:11 2005
         (312 letters)



>mm_chr2_68207127_68207839
          Length = 713

 Score =  574 bits (297), Expect = e-168
 Identities = 306/309 (99%), Gaps = 1/309 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattc-tttttttttctttgtaaaattaacatttggacattggtaacttagaattaaat 63
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gaattcttttttttttctttgtaaaattaacatttggacattggtaacttagaattaaat 454

                                                                       
Query: 64  gggctaaaaaaccacaataaaatataaagataactctattacatactgctcttacttcaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 gggctaaaaaaccacaataaaatataaagataactctattacatactgctcttacttcaa 394

                                                                       
Query: 124 aagagtttagatgaaacccaagacattttctattctgggattttgaaatgtgtttatgtt 183
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 aagagtttagataaaacccaagacattttctattctgggattttgaaatgtgtttatgtt 334

                                                                       
Query: 184 ttcagtgcaattaaaggaaacggcgactttttgtacctgtttagtagaaaacatcctatg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ttcagtgcaattaaaggaaacggcgactttttgtacctgtttagtagaaaacatcctatg 274

                                                                       
Query: 244 gtttggtgagcttgcctggcccatggtctctgatagcatgctctgcagggtagagaatgg 303
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 273 gtttggtgagcttgcctggcccatggcctctgatagcatgctctgcagggtagagaatgg 214

                    
Query: 304 caggtggca 312
           |||||||||
Sbjct: 213 caggtggca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 713
Length adjustment: 9
Effective length of query: 303
Effective length of database: 704
Effective search space:   213312
Effective search space used:   213312
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)