BAC Information

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BAC

Clone NameMSMg01-264H22
Chromosome2 (Build37)
Map Location 60,949,891 - 60,950,239
singlet/doubletsinglet
Overlap genenone
Upstream geneBaz2b, LOC667106, Ldha-ps, LOC100039092, March7, Cd302, LOC625861, Ly75, LOC100039176, Pla2r1, Itgb6, Rbms1, ENSMUSG00000075325
Downstream geneTank, Psmd14, Tbr1, LOC100039274, Slc4a10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-264H22.T7 (MSMg01no264_h22.b1)MSMg01-264H22.TJ (MSMg01no264_h22.g1)
ACCAG406026AG406027
length711912
length of high quality
(start - end)
314 (45 - 358)45 (75 - 119)
definitionCHROMAT_FILE: MSMg01no264_h22.b1 PHD_FILE: MSMg01no264_h22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:41 2005CHROMAT_FILE: MSMg01no264_h22.g1 PHD_FILE: MSMg01no264_h22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:01:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTGTTTAAGAAAAGTATGGTGGTGGTTTAGACCTCCCCCACCCCCA
CCTCCCATGAAAAAGAAAGAGAGAAAGAAAGAAAGAAAGAAAGAAAGAAA
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA
AAGAAAGAGAAAAATTCTAAGTAAGGATTGTTCTTAATTCCTCTTCACAG
TAGCAATGACACACTCGGTACCACCACCCTCTTTGTAACTTAGATATTCG
TTGGGGTTTTAGCGTCTATGACTCGGGTGTTTTATCAAGTTCACCAACAC
TGGTGAGAGTGAGTTTTGACCCCANAACCTTTCCAGCTTGGTTCTGAAGT
CTCTGGGATGAGCGGGTTGATGGAAATAAAGAGAAACACTAATGCGGTCA
CTTAGTTCTTGTGGAAAACATTCTAGGTTTGTACAAAAACTTCCCTTCCC
CTTGAGATTTCCATCTCTCTCCCCTTTCAGCTCTTCTCGTGCTTTTCAAC
CGAATGGACTCGAACCAAGATTGAGCCACTGGCGTTGCTTCCAGTGTTTG
TTAGAAGACCTGATGCTTGTGGAGATTTCTGACTCTAATTCTTTGTGCAG
TCGATATTTGGGAGGTGGGTGAGTTAGGCATAGATACTCCACTGTACTTT
TTGAGACTTTT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGTCCCTATTGGGGGGGGGGAGGAAA
TGTATTGGTAGATTCCTGATTCCCTCTAATACACATCTCCTATGATCACA
ACGTTTCTTCTCCTTCTGTATCAGAGGTGAGGCAGGTACCAGACAACCAC
TACACAATCTCTATAAAAGACTATGTTTTATATTACTCTCCTTGAAAACA
CAGAACACCTCTTCCTCTAGCAGTATTTGTAACACAAAAATTATATTTAT
ATAACTCATCAATATAACAAACCACAAAACATTTTTTTTTATACCAACAC
AATATTCTTGACAAAAGAAAAAAGATTTTAAGTGGATTCCCCGAAAACGN
ATACCCTTTTTTGTAATTTTTTAATGAATTTATGTTGTTGCCCACCCCCT
CTAAAATAAAAAAAAAAAATTTGGGGGGGGGGGGGGGGTGGTTTCTCCTC
TATATCATCAGCTATACAATTATGACTCAACTTTTCTTCATCCCCGCTAT
GTACTCAACATCTTTATATATTTCTCCTTATTATCTTATACACACTTCTA
ATATTACCATATGTTTCTACAATATTTATTATATATATATCTACCTCGTA
TACATCTATTTTTACTTTATACTACATTTTTATCATTTACGACTCTTTCA
TATACCTGTTTCTTATCCTTATTTATTATATGACATTATACTATTTACTA
ATAATAACGTTTGATTGTTTATTTATTATATCGATATCAAACTACTACTC
CTCTACTGTCTTCTGTTGCTTCATTATTTCACCTCCATTTCTCATCCGCT
TCTTCTGCACGCACGCGTATCTTAAACCACATATTACCTCACGACCCGAA
ACGAACGATTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no264_h22.b1 MSMg01no264_h22.b1 CHROMAT_FILE:
MSMg01no264_h22.b1 PHD_FILE: MSMg01no264_h22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:01:41 2005
         (314 letters)



>mm_chr2_60949726_60950439
          Length = 714

 Score =  445 bits (230), Expect = e-129
 Identities = 302/350 (86%), Gaps = 41/350 (11%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttgtttaagaaaagtatggtggtggtttagacctcccccacccccacctcccat 64
           |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 166 gaattcttgttttagaaaagtatgatggtggtttagacctcccccacccccacctcccat 225

                                                                       
Query: 65  ------gaa--aaagaaagagagaaagaaa-----------------------------g 87
                 |||  ||||||||| |||||||||                             |
Sbjct: 226 gagaaagaaggaaagaaagaaagaaagaaaggaaggaaggaaggaaggaaggaaggaagg 285

                                                                       
Query: 88  a---aagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaga 144
           |   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 aaggaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaga 345

                                                                       
Query: 145 aagaaagaaagaaagaaagagaaaaattctaagtaaggattgttcttaattcctcttcac 204
           |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 346 aagaaagaaagaaagaaaga-aaaaagtctaagtaaggattgttcttaattcctcttcac 404

                                                                       
Query: 205 agtagcaatgacacactcggtaccaccaccctctttgtaacttagatattcgttggggtt 264
           ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 agtagcaattacacactcagtaccaccaccctctttgtaacttagatattcgttggggtt 464

                                                             
Query: 265 ttagcgtctatgactcgggtgttttatcaagttcaccaacactggtgaga 314
           |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ttagagtctatgactcgggtgttttatcaagttcaccaacactggtgaga 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 90
Number of extensions: 29
Number of successful extensions: 29
Number of sequences better than 10.0: 1
Number of HSP's gapped: 23
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)