BAC Information

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BAC

Clone NameMSMg01-265D13
Chromosome2 (Build37)
Map Location 28,482,511 - 28,482,801
singlet/doubletsinglet
Overlap genenone
Upstream geneRxra, Col5a1, Fcnb, Olfm1, Gm347, 1700007K13Rik, Mrps2, LOC665412, Gbgt1, Ralgds, Cel, Gtf3c5, Gfi1b
Downstream geneTsc1, 1700026L06Rik, 1190002A17Rik, LOC665643, Gtf3c4, Ddx31, Barhl1, LOC100033452, 1700101E01Rik, LOC100039666, Ttf1, Setx, Ntng2, Crsp8, Rapgef1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265D13.T7 (MSMg01no265_d13.b1)MSMg01-265D13.TJ (MSMg01no265_d13.g1)
ACCAG406549AG406550
length692748
length of high quality
(start - end)
262 (7 - 268)289 (74 - 362)
definitionCHROMAT_FILE: MSMg01no265_d13.b1 PHD_FILE: MSMg01no265_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:38 2005CHROMAT_FILE: MSMg01no265_d13.g1 PHD_FILE: MSMg01no265_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:39 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTGCCATGTTGGGGTTACAGAATGGTCCTGAAAAGTTACAGAGAGGAGAA
CCTATTAACTACTTGGGTTATAAAATAAGTCAACTAAAAACTCAACCACA
AAAGGTACAGATCAGAAGACATCAGTTGCAAGCTCTTAATGATTTTCAAA
ATTAATGGGAGAGATTAATTGGCTATGGGCTACCATTGGATTAACTACTC
AATATTTAAGTAATTTGTCTCAAATGTTAGAAGGAGATTTGGACTTATCC
AGTCCAAAATGGTTAACATTTTTTTTTGAGAGAGAGTTAACTCTAGNAGA
ACAGAGTTTTTGGGTGATCTTCAAGGCAAAACCCCTATTTTTTGTTTATT
TNNTNTTTAANTCANCCTCCTAATGGGCACTTNTAGATATGAGAGGGGAG
AGTTTCTTAGCTCACAAAGCAAAACATTAAAGAATTACATAGAAAACGTT
TCTGACTTAATCATAAAAGGTAGAATAAGACTATGTCAGTTGTCAGGAAC
AGAAAGATATGTTAGTACCTTATACAACAACAATGCTGAGATTATGTCAT
GGTTAATCAATGAAGGCTGGTAAAGAGCTTGTAGCAACTATTTTGGAGAA
ATTAACAGTATATATACTATAAGCAAACATCCTCAGTGCATAAAAAGAAC
TAACTGGATTCTCCCCACCATTTGAAAAGAAATGGCAATTCC
CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTGGACTGAGTTGTCTGGGTGGAGAA
GAAACGTCAAGGTGGCATAGCATTCAGGGTATGGCATTATGACTGTCACA
GCTCTCAGTCATCACTACCAGAGAAAGATAGCAAAAAGGGGGAAAACCCT
TTGGGGAAAAGAGCAGGAATGAATTTAAAGATGCAGGCAAGGCAGAGACA
AGAAAAACAGCCATTTAGAGGATTAGCACCACTACAGAGAAGACTTGGCT
CCAGGGAGATAGCTTCATGGTTTGATCAAGTTCCTGTCACCAAGTATGAC
AGCTTCCGTTCAGTCTTTTTTTCCCCCATCGCGCCCGCAGAGAACCAATA
CCCACAAGCTTCCTATAACCCTCAACAGGAGACATGGCAGGTACTTACCC
ACGCATTAGATAGACAGACAGACAGACTGACTGACAGACAGACAGACAGA
GCCTTTCCTCGATATAGATTCTGGAAATTGAACTCTGGTGCACTAGGCTT
GTGTGGTATGTGCCTTTTTCCACTGAGCCATCTCACCAGCCCTACATGTG
TATGTTTGTGTGCATGCAACCCCATCATCATCATCATCCTCATCATCCAT
AAGTAAAACAACTTCTTAAAGAGAAGCCTTCTAGTCGGGCGTGGTGGCGC
ACGCCTTTTATTCCCAGCACCTGTGGAGGTAGAGGCAAGGCGGATTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_d13.g1 MSMg01no265_d13.g1 CHROMAT_FILE:
MSMg01no265_d13.g1 PHD_FILE: MSMg01no265_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:39 2005
         (289 letters)



>mm_chr2_28482188_28482876
          Length = 689

 Score =  474 bits (245), Expect = e-138
 Identities = 279/291 (95%), Gaps = 2/291 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actggactgagttgtctgggtggagaagaaacgtcaaggtggcatagcattcagggtatg 60
           |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 614 actggactaagttgtctgggtggagaagaaatgtcaaggtggcatagcattcagggtatg 555

                                                                       
Query: 61  gcattatgactgtcacagctctcagtcatcactaccagagaaagatagcaaaaa--gggg 118
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 554 gcattgtgactgtcacagctctcagtcatcactaccagagaaagatagcaaaaagtgggg 495

                                                                       
Query: 119 gaaaaccctttggggaaaagagcaggaatgaatttaaagatgcaggcaaggcagagacaa 178
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 494 gaaaaccctttggggaaaagagcaggaatgagtttaaagatgcaggcaaggcagagacaa 435

                                                                       
Query: 179 gaaaaacagccatttagaggattagcaccactacagagaagacttggctccagggagata 238
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gaaaaacagctgtttagaggattagcaccactacagagaagacttggctccagggagata 375

                                                              
Query: 239 gcttcatggtttgatcaagttcctgtcaccaagtatgacagcttccgttca 289
           |||||||||||||||||||  ||||||||||||  ||||||||||||||||
Sbjct: 374 gcttcatggtttgatcaagggcctgtcaccaagcgtgacagcttccgttca 324


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)