BAC Information

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BAC

Clone NameMSMg01-265E05
Chromosome2 (Build37)
Map Location 100,108,164 - 100,108,451
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC621386, LOC668702
Downstream geneLOC100042907, LOC241572, LOC668705
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265E05.T7 (MSMg01no265_e05.b1)MSMg01-265E05.TJ (MSMg01no265_e05.g1)
ACCAG406577AG406578
length833780
length of high quality
(start - end)
---288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no265_e05.b1 PHD_FILE: MSMg01no265_e05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:42 2005CHROMAT_FILE: MSMg01no265_e05.g1 PHD_FILE: MSMg01no265_e05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGTTGTTTATTTGNNNNNCCNCCCGCCCCGACCCCNNCNNNCTTTCXXXX
XXXXXXXXXXXXXXXXXXXXXXXXNATTCCGAAGCGGCGNGGNAANNNNA
GAATATTTCCCAAGAAAGGCANGNGNNAAAGNCAGAGAACAGGAGAGNCA
CAGAACNNANATAACGCCCCNANANAGGAAGAAAAAGGAAAGCCAGGANC
CAACGGACCCAACAACGGNCAGCAACAAGNAAAAGAAACCAGAAGNAGCA
CAGCCCAAAGAGGAAAGGCACACCAGCTGGCCCAAAANAAGCTCCTATCC
TAAAGAAGNAGGTTCCAATAGATTTGCTGGCATGTAAATACAATCAGGCA
AACAAGAACGGATTTTTTTTTTTTCCATTATTCTTATGTAGGCCACCAGC
AGAATTTTTTTTTTTTACCCCCCCCCCCCACCAGCAAAANTGGAAAAAAG
AAGGNANAAACCCGGANNCTTGAACNGTACCNNAAATGGCCTATGGGTGC
GAGGTTTGCTTGTTCTCTGTCTCTTGTGATTTATAATAGTTAACCCACTC
TGCCTGAATATAAGCTTTTCATAATTATTATGTTTCAAGATCTTGATTAA
TGGCCCCCGTGTCTTCTTGCTTTTGGATTTTAAATCACGTGTTTTTTTCT
TTCATTTCGTTTTGTATTTTATTTTGAGATATTGTCTTGTTTGAAACAAA
TTATTATCCATCACCTTCATCTTTTATGTTCCCAAACAAATACCTTTTAT
CACCTATTTTGGCTAAAAATTTTTTATTTTTTAATTTGCTTGTACGTTTT
TTTTTATAACAAAAATAATACATTTTTTTATAN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATATTTCTGCTTTCCCTACAGAGT
GATCATGTACTTGGGACCATCCAGTGTGTACATTTCATACCATTTCAACT
TCCAAATTTTCTGAAATTTTACTGAAAAATAAGGCAGATTTTCTATATAC
TTATGACTTCTTTTTATCTCTGAGTAATATCTGATGCCTGAATACACCAC
TGTGAATGACTCTACTTTAGAGGAACAAAAATAATAAGACATGCATTTTG
TTTGTGAGAGGACAAAAGTGCAGAGAAAAGGACTTGGTGGAAGAACATAG
ATGCATGGAGAGTTATGTTTTTTGGCATTCACCCACCCCACCTCATTATG
TTTTGAAGAGGTACATATCACCCCATCTATTGCCAGAACTGAGCCTCAAG
AAAGCAGTGAACTTGAATCTGTATATATTTTGGTAGCAGTTTTCCATTTA
TTCCATGCCAGACATTTGCTGTGAAGGCCTTTGGGAGATACGGCGTTTAT
CCGAGTCCTGAAAGAGAATCTATTTAATATTCCAATTATGAAATGATCTT
TGCTAAAATAATTACTGACTAAATATACTGTTGTTTCGCCAAGTTAAATC
TTGACTTTGGCCCGTGATACCCGATTCCATTTCACTTACTTATAAGGAAT
AGTTTACCTGCCTCTAAGTTTTTTGGTTATCTTGAACAAATCCACCCTGA
CTTTACTACTAATATTTTTTCTGAATTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_e05.g1 MSMg01no265_e05.g1 CHROMAT_FILE:
MSMg01no265_e05.g1 PHD_FILE: MSMg01no265_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:42 2005
         (288 letters)



>mm_chr2_100107964_100108651
          Length = 688

 Score =  534 bits (276), Expect = e-156
 Identities = 285/288 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatttctgctttccctacagagtgatcatgtacttgggaccatccagtgtgtacatttc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 atatttctgctttccctacagagtgatcatgtacttgggaccatccagtgtgtatatttc 260

                                                                       
Query: 61  ataccatttcaacttccaaattttctgaaattttactgaaaaataaggcagattttctat 120
           ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ataccctttcaacttccaacttttctgaaattttactgaaaaataaggcagattttctat 320

                                                                       
Query: 121 atacttatgacttctttttatctctgagtaatatctgatgcctgaatacaccactgtgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atacttatgacttctttttatctctgagtaatatctgatgcctgaatacaccactgtgaa 380

                                                                       
Query: 181 tgactctactttagaggaacaaaaataataagacatgcattttgtttgtgagaggacaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgactctactttagaggaacaaaaataataagacatgcattttgtttgtgagaggacaaa 440

                                                           
Query: 241 agtgcagagaaaaggacttggtggaagaacatagatgcatggagagtt 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtgcagagaaaaggacttggtggaagaacatagatgcatggagagtt 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)