BAC Information

Click to search

BAC

Clone NameMSMg01-265E12
Chromosome2 (Build37)
Map Location 74,745,440 - 74,745,714
singlet/doubletsinglet
Overlap genenone
Upstream geneAtp5g3, LOC667729, LOC100040172, Lnp, LOC100040519, Evx2, Hoxd13, Hoxd12, Hoxd11, Hoxd10, Hoxd9, Hoxd8, 1700109F18Rik, Hoxd3, Hoxd4, LOC667804, Hoxd1, Mtx2, LOC667817
Downstream geneA330043C09Rik, LOC667739, LOC545423, LOC100040324, LOC667828, Hnrpa3, Nfe2l2, E030042O20Rik, LOC623453, Agps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265E12.T7 (MSMg01no265_e12.b1)MSMg01-265E12.TJ (MSMg01no265_e12.g1)
ACCAG406589AG406590
length844781
length of high quality
(start - end)
319 (94 - 412)276 (77 - 352)
definitionCHROMAT_FILE: MSMg01no265_e12.b1 PHD_FILE: MSMg01no265_e12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:43 2005CHROMAT_FILE: MSMg01no265_e12.g1 PHD_FILE: MSMg01no265_e12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTAATAAATTTTCCATTTCCCCACAATTAACTAATTCTCTCTTNTAATC
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAAGGCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCAGTA
GCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAAATC
AGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAGTAC
TTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATA
CAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATATGAT
AGTATATATAAGTGACCCTAATAATTCTACCAGAGAACTCCTAAACCTGA
TAAACAGCTTCTTTTTATTTAGCCGCCCCCCCCCACAAACTCAAACAAGT
CAATGGCCTTTCTCTACACCCAGAATAAACAGGACTGAGAAAGAAATTAG
GGAAACTACACCCTTCTCAATAGTCACAAATAATATAATATATCTTGGCG
TGACTCTAACTAATGAAGTGAAAGATCTGTATGATAAAAACTTCCAATCT
CTGACGAAAGCATTTAAGGAAGATCTCCAAAAGATGTAAAGATCTCCCCT
GCTCATGCATTGGCAGGATCAACATTTGTTAAAATGGCCTATCTTGCACA
AAGCCAATCTACGGATTCAAAGCTATCCTCCTTCAAAATTCCAGCTTCTA
TTCTTTCAAAGACATTGTGTAGGTATCAATTATGTCTATATTAGCTTCGT
GTATTATCTATAACAAACCTTAAGGACTTACTTAACTCGTCCTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATCGGGAAGCCTGAATAAATGTTT
TCAAATAAAATGAAACACCACATACGTTCTTTTGCTTTGCTGCAAGTTTG
GTTTTGGTTTTGTGTTCAAGTTAAAAAAAAAAAGAAGCCCAGCTCATTCC
CAGGCTGCAGCAGATGTCCCAGCGGATGGCCCACCCTTGACTTGGGTTTG
TCTGGCCAAGTCTCATAAGCTTGGCTTGTTGTAGAGGGAGGATCGCAGTG
ACCCTGGCTGCTTCCTGCTTGCTATTTTCAGATAGTCCCAGATGACCAGT
TTGNGNTCTAGGTTTGATANATTCTCCCCAACAAACCCCAATATTTTCTT
AAGCGCTTTTAAGTTGCCCCCCTTTGCCCAAAATAAAAAAGATTTAATGA
GTGACAATATTGCTGTTTATAAGTCCCTTAGTGCATATTTTTTAGAATGG
TTGAATGAGTCGCTTTGTTTACACTCATTTACTACATCGGCCATGGGAAA
TGGTACAACGTTCAAAAATCCCTTAAAATGACGTGTGCTAGAATAACCCT
ATCTGCTTGGTCGTTTCTTTAAGCATCACGTCCTTTTAAAAAATGATTCA
TTTGAACTTTGAATAACTCTGGTCCGCAATTTTAAAATGGGAGAAGAATA
AGGTTTTTCAAAATAATAATAAGCCTTTGTACCTGGTGTAATCCCTATGC
CCAATAATAATATTACAAAAAAGATTCAGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_e12.g1 MSMg01no265_e12.g1 CHROMAT_FILE:
MSMg01no265_e12.g1 PHD_FILE: MSMg01no265_e12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:43 2005
         (276 letters)



>mm_chr2_74745240_74745914
          Length = 675

 Score =  495 bits (256), Expect = e-144
 Identities = 271/276 (98%), Gaps = 1/276 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcgggaagcctgaataaatgttttcaaataaaatgaaacaccacatacgttcttttgct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcgggaagcctgaataaatgttttcaaataaaatgaaacaccacatacgttcttttgct 260

                                                                       
Query: 61  ttgctgcaagtttggttttggttttgtgttcaagttaaaaaaaaaaagaagcccagctca 120
           |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 261 ttgctgcaagtttggttttggttttgtgttcaagtt-aaaaaaaaaagaaacccagctca 319

                                                                       
Query: 121 ttcccaggctgcagcagatgtcccagcggatggcccacccttgacttgggtttgtctggc 180
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 320 ttcccaggctgcagcagatgtcccagcggatggcccgcccttgacttgggtttgtctggc 379

                                                                       
Query: 181 caagtctcataagcttggcttgttgtagagggaggatcgcagtgaccctggctgcttcct 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 caagtctcagaagcttggcttgttgtagagggaggatcgcagtgaccctggctgcttcct 439

                                               
Query: 241 gcttgctattttcagatagtcccagatgaccagttt 276
           |||||| |||||||||||||||||||||||||||||
Sbjct: 440 gcttgcaattttcagatagtcccagatgaccagttt 475


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 675
Length adjustment: 9
Effective length of query: 267
Effective length of database: 666
Effective search space:   177822
Effective search space used:   177822
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)