BAC Information

Click to search

BAC

Clone NameMSMg01-265G08
Chromosome2 (Build37)
Map Location 166,880,974 - 166,881,195
singlet/doubletsinglet
Overlap geneAI481105
Upstream geneNcoa3, Sulf2, LOC670775, Ppia-ps2_2197.1, BC067047, Trp53rk, Arfgef2, LOC670802, Cse1l, Stau1, LOC383774, Ddx27
Downstream gene1500012F01Rik, LOC668950, Kcnb1, Ptgis, LOC668951, B4galt5, Slc9a8, Spata2, Zfp313, Snai1, Ube2v1, AI840826, Cebpb, LOC100043728, Ptpn1, 2310033K02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265G08.T7 (MSMg01no265_g08.b1)MSMg01-265G08.TJ (MSMg01no265_g08.g1)
ACCAG406670AG406671
length846780
length of high quality
(start - end)
227 (99 - 325)---
definitionCHROMAT_FILE: MSMg01no265_g08.b1 PHD_FILE: MSMg01no265_g08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:52 2005CHROMAT_FILE: MSMg01no265_g08.g1 PHD_FILE: MSMg01no265_g08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTCCTTTTTTTCCCTGNTGCCCTTTCGACAAAACAAAAANNNNNNNNNC
TATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCAAGCGACTGCTGTATGGGTCCTTAGTGTGCATGTCCAAGGA
CAACTTCGAGACGTTTCTTTTTGCCACCGTTTCAAACCGAGAGCACGAAG
ATCTCTGCCAAGGGATTGTCCAGCTGTGCTTCAACGAGCAGAGCCAGCAG
CTGCTGGCTGACGTTCAGCCCTCTGACTCTTTCCTCATGGTGGAGACAAC
AGCCTACTTTGAGGCTTATCGGCACGTCCTGGAAGGGCTACAAGAGGTCC
AGGAAGAAGATGTCCCCTTCCAGAGTATCATTGTGCAGTGTGACTCCTAT
GTGAGGAACCCGAGTTTTTTGCTACCCGCCCCCCCCACCATGACTTCACC
CTCCTCATGTAGAATCCCTCACCCCTGATGAAGTCTCTGACAGGTGCTGA
GGCTTTGAGACATCCTAGGATTAATGTCTTTGACTTTGGCCAATGGCCCT
TCCATAAATCCCTTGATGCTGGATGACTCCCAGATGGAATCCCTTACAGC
TCGCCCCTCACCTAGGTAGCTGGCTTATTATTTAGGGACCTTCCTGCTAA
TAGGTTATTACGATTCCCTCTATAGCCCTGTGATCATCTAAAAAGGGGAA
TATTTTCGTTCTTACATGTTTTAGAATGCCCTCATTTTAAAAACTATTCT
CCCCTCGAATCGCTATCGGAAATACAAACTCTGAAGTAATAACACCAATT
TTTATTATCCTATAGATGGAAATATCATTTTCATATAGGTGGCAAT
TTAGGAGATTNNNNNNNNNNNNNNTTTTTTTTNNNNNNNNTCTCGATATA
TGTTTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXNTTTCGTCTTANGAAAATCCAAGTCAAGTGGTGTNAA
TAATACTGGTGCANGNCTTTGTGNCCGTGTANTTTTGTNTTTGATNCTTA
TTGNANNCTTAAAATTGATGTTTGNACTCTTGTTACTGCCCNCCTCCTGT
GTCTTGANTGTGCTTATTACTGTTCTTTTTTNTATCCCAGTTATTTGATC
TTTATGTATGNTTGAAATTACCCTAATTAACCCCTCCCTGTCCTGACTAT
TGTTTTTCCTGTNACCCCTTTCCTTTAANNNNNCATTTTTANNCTTGTTT
TTCNNNNTTCTTGATCTCTCTTTTTTTTTTTTGTGGTCTCTTTTGGTCTT
CCCCCCCCTTTTCCCTTTTAAATAATATAAACCCTTTCTTACCTTTTATT
TACTTTTTTTTCTTTTTTTTTCTTTAATACCCTTTTTTTTTTTTTTCTTT
TCTTTTTTTTCCCTCCTTATTTTTTTCTCTCTCTTCATTTAAACAGGAGG
GGGAGAGTTCTATTTTCTCCTCTCCTTTCCCATATTCAAAGAGAGGAAAA
GAAGAGTCATTCCAGTTTTTTTTTNTTCNTTATATTGTNAAAAGATGAGA
GAGAAGAGCCTTCTTTTTCCNTTTTCTTNCTTTCTTTCTTTATTTCCCTT
CTCCTTCAATGATTTGAGAAGGGGGGAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_g08.b1 MSMg01no265_g08.b1 CHROMAT_FILE:
MSMg01no265_g08.b1 PHD_FILE: MSMg01no265_g08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:52 2005
         (227 letters)



>mm_chr2_166880770_166881396
          Length = 627

 Score =  429 bits (222), Expect = e-125
 Identities = 222/222 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaagcgactgctgtatgggtccttagtgtgcatgtccaaggacaacttcgagac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gaattccaagcgactgctgtatgggtccttagtgtgcatgtccaaggacaacttcgagac 367

                                                                       
Query: 65  gtttctttttgccaccgtttcaaaccgagagcacgaagatctctgccaagggattgtcca 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gtttctttttgccaccgtttcaaaccgagagcacgaagatctctgccaagggattgtcca 307

                                                                       
Query: 125 gctgtgcttcaacgagcagagccagcagctgctggctgacgttcagccctctgactcttt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gctgtgcttcaacgagcagagccagcagctgctggctgacgttcagccctctgactcttt 247

                                                     
Query: 185 cctcatggtggagacaacagcctactttgaggcttatcggca 226
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 cctcatggtggagacaacagcctactttgaggcttatcggca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 627
Length adjustment: 9
Effective length of query: 218
Effective length of database: 618
Effective search space:   134724
Effective search space used:   134724
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)