BAC Information

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BAC

Clone NameMSMg01-265G14
Chromosome2 (Build37)
Map Location 125,944,283 - 125,944,597
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043375, Slc12a1, Dut, A530010F05Rik, LOC100043698, Fbn1, Cep152, Shc4, Eid1, 3110001I20Rik, Cops2, Galk2, Fgf7
Downstream geneDtwd1, Atp8b4, Slc27a2, Hdc, Gabpb1, Usp8, LOC100043714, Usp50, Trpm7, 2010106G01Rik, Ap4e1, Blvra, Ncaph
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265G14.T7 (MSMg01no265_g14.b1)MSMg01-265G14.TJ (MSMg01no265_g14.g1)
ACCAG406682AG406683
length746777
length of high quality
(start - end)
322 (23 - 344)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no265_g14.b1 PHD_FILE: MSMg01no265_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:53 2005CHROMAT_FILE: MSMg01no265_g14.g1 PHD_FILE: MSMg01no265_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTAACATATTGGTGTAT
CTAATCTTATGCAGTGAGCCATGAACATCTTCGTTACTCAATGATCACAT
ATGATCAGTGGAGCATTTAGTTCATAGCTTATTCATTATGTATAATATAA
CCTAGTTGTTTTCTTTTAAATTGACTAAAAGATTATAAGAGTAAAATAAA
AATGATATTATATAGGTAAATAGAACAAAACCAAGAATATACAAAGAAGT
CACCAGTTTCCTAACAGAGTAACTGTAGAACTACTGTGGTACTAGACTAG
AGAACACAGTATTCAGGATAATGGTCATGGTGGTAAAACTTTTTTTTTTC
CACCCCCCCCCCCCACACAAATTCTTGTTGAAAGGTAATCAAAATACGCT
CATATATTTAAACAAAACATATTTTATATACTATGAAGATAATTATTGTG
TCTGTTAAGTTTTAACATTTACCTTAAAGAATGCATCCTTTCTCCTTAGA
GGTATTTTTATGAAAAGTGTGACATAACTTTCTGCAATTCTATCAAACAA
GAAATCTTCATCTCTTTTGGCGGGTTTAAGGAAGACACATATATGAAATT
AGTGCCAATTACAATTTATATTAGAAAGTTATATATACCATATTATTACA
TGTAATGTAATCTGTATATAAAATATGAGAATATAGTCTATTCTCTAAGG
GAAGGTCAGCTATTTAAACTTGAAGGGACATTTGTTTCATCAACAC
CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTACTTGCATCACCAAGATCTTA
AGTACTTTTTTTATTGTTGAGATAAGACACCATGAGTAAGGCCACTTGTA
AAAGGAAACATTTAATTTGGCCCTTATGGTTTTAGAGGACTTATTGTGGT
TTGAATGAAAGTGACACCCAGAGGCTCATAGGAAGGTGTGGCCTCATTGG
AGGAAGTGTGTTGTTGGAGTTAGCTTTGGGATTTCAGAAGCCTAAATCAG
GCCCAGTGGCACTGTTTGCTGTTGCTGATGTAGAACTCTCAGTTGCATCT
CCTGCACCATGGTTTTAATCATTTCACCCCCCCCCACGCCAGGATGATAA
TGGAAAACCATAAGACAGGACCAGAGTCTGTAACAAAAAAAAGAACAACT
GAGACATTACCTCGTGATCTACAACTTAAAGGAGAAAGGGAGGGTGGTGG
TGAGCTGGCCTCCAGTGACCACACCTCCTCCCACAAGGCCACATCTCCTA
ATCCTTCCCCAGTTCACAGACTGGGGACTAAAAATTTATACGAGCCTACG
GAGACCATTCTTTATTTAACCACCACAAACACCGCTCTTCTTAGCCAACC
AAAACATTTACCAACATAAAATTCAATAATGTCGAACAAAGGACTGGAAA
AATATCCTCTGAAATTAAAATATTTTGCTCAGCATGTTTTGGGACTCTGG
GTTTCAATCCCCCGTTACCATTCATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_g14.b1 MSMg01no265_g14.b1 CHROMAT_FILE:
MSMg01no265_g14.b1 PHD_FILE: MSMg01no265_g14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:53 2005
         (322 letters)



>mm_chr2_125944079_125944800
          Length = 722

 Score =  609 bits (315), Expect = e-179
 Identities = 315/315 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgtaacatattggtgtatctaatcttatgcagtgagccatgaacatcttcgtta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgtaacatattggtgtatctaatcttatgcagtgagccatgaacatcttcgtta 264

                                                                       
Query: 65  ctcaatgatcacatatgatcagtggagcatttagttcatagcttattcattatgtataat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctcaatgatcacatatgatcagtggagcatttagttcatagcttattcattatgtataat 324

                                                                       
Query: 125 ataacctagttgttttcttttaaattgactaaaagattataagagtaaaataaaaatgat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ataacctagttgttttcttttaaattgactaaaagattataagagtaaaataaaaatgat 384

                                                                       
Query: 185 attatataggtaaatagaacaaaaccaagaatatacaaagaagtcaccagtttcctaaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 attatataggtaaatagaacaaaaccaagaatatacaaagaagtcaccagtttcctaaca 444

                                                                       
Query: 245 gagtaactgtagaactactgtggtactagactagagaacacagtattcaggataatggtc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gagtaactgtagaactactgtggtactagactagagaacacagtattcaggataatggtc 504

                          
Query: 305 atggtggtaaaactt 319
           |||||||||||||||
Sbjct: 505 atggtggtaaaactt 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)