BAC Information

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BAC

Clone NameMSMg01-265H09
Chromosome2 (Build37)
Map Location 143,949,016 - 143,949,265
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668915, LOC668916, Pcsk2, Bfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik
Downstream geneLOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1, 1700010M22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265H09.T7 (MSMg01no265_h09.b1)MSMg01-265H09.TJ (MSMg01no265_h09.g1)
ACCAG406716AG406717
length693757
length of high quality
(start - end)
253 (3 - 255)282 (77 - 358)
definitionCHROMAT_FILE: MSMg01no265_h09.b1 PHD_FILE: MSMg01no265_h09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:57 2005CHROMAT_FILE: MSMg01no265_h09.g1 PHD_FILE: MSMg01no265_h09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:02:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCTATGGAATGAAGAGTTGGGAAAGTCAGCCCAAGCAGCTTAGTAGACTC
TGACACACCCACCGTCTCAATGTTTGCTTCAAGGGAAGTTGAGATGAGAT
TCTAAGTAAATGCTTGTTAACAGACAGGTGAAACGGTAACAGGCTAGGTA
CCACCAGTGCAGGGTGCGCCAATTTCCACGTGTTGAGGAATTCAGTTCTT
ATCCCTTTGGCTAATGACCATGTACTTTGGGTCTCCTTTTGTCATCTGAT
TCTTTATTATGACACCATCTGACATTAATTGTTGGTTTCTTTTTCCTCNG
TTACCAAGGACTGGNCCCAAGGTCACTATTAAAGTCTTTTGGTCACCCCC
CCCATAAAAAAAAAAATAATTACTTCTGCTTGTTGCGGTGCATCACTGTG
TAATACTGGAAGCATAGGGACACAGTTTTCCTATGGTGTCTTTTTGTAGG
ATCTGAATGGCGGAAAGGGTTATACAGGACATCTTGGCATCGTCATGATA
AGTAGTTTCTTGATTGTTTACACTTGTTATTGCCTCTTTGTCAAGACCCC
TTTGACAATTAAAAATCTATTGTGATAAACCAAATTAAACACCCAGACTA
ATTCATAAATCCCGTTATTATAACCCCTACATAATGCTCCGTAAATTTTT
CTTCAGCGTTTTTGTTGTGTATTTGAATCCTCTTAGCTCAGTA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTCTGTAGACCAGACAGGCCATC
CACCTGTCTCTTTCAAGTGCTGGCATTAAAGGTGTTCTCCACCACCACCC
AGCTTCTACTTTACATGTGCATATAAGCATCAGTGTGCAGATTCATTGAC
AATTGACATGTGAGTGCAGGTGCTCTCAGAGTCCAGGGCACCGTAGTCAC
AGCTGGCTCGTTTGTGTGGTTGGAAGTCATCCTGTGTGTGAGTGCTGGGT
ACTGATCTGCGGTCCTCTGACTTTCATAAGCACGCTTAAACCATTCGGCC
ATGTCTCTATTTAGTANATTTACCAAGACTGGACCGCCTTTTTGTTGATA
CACCATCTTAGTAACGCCCGCTCACAAAAAAAAAAAAGAATTGTATCCTG
TTACTAGCTCACAAATCCTTCCTCAATGCTTACTTTCCCTTGTACCATTT
CCCCTGCCTCTTCCTGAACCCCAGTAATAAATGGTATCCTGGCTTCTGAA
TGCATTGTGTACTGTGCCTGTATTAGTACTGATTATATGTATTCTTAACG
GAATAGCCCACTTGTGTTTCTGGTTGCTTTCAGGTAACATTACAATTTGT
TGACGGCGTCAATTAATTGTGGAATGAGCTTTATCAACGATTTTCTTTCC
CCCCTCAATATTCTGCTCTGAAAAAATGAAAAATTAATTTATGCTACCCT
CAACAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_h09.b1 MSMg01no265_h09.b1 CHROMAT_FILE:
MSMg01no265_h09.b1 PHD_FILE: MSMg01no265_h09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:02:57 2005
         (253 letters)



>mm_chr2_143948816_143949468
          Length = 653

 Score =  445 bits (230), Expect = e-129
 Identities = 245/250 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatggaatgaagagttgggaaagtcagcccaagcagcttagtagactctgacacacccac 60
           |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct: 450 tatggaatgaagagttgggaaagtcagcccaagcagcttagtagactccgacacacccgc 391

                                                                       
Query: 61  cgtctcaatgtttgcttcaagggaagttgagatgagattctaagtaaatgcttgttaaca 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 390 cgtctcaatgtttgcttcaagggaagttgagatgagattctaagtaaatgcttgttaata 331

                                                                       
Query: 121 gacaggtgaaacggtaacaggctaggtaccaccagtgcagggtgcgccaatttccacgtg 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 gacagctgaaacggtaacaggctaggtaccaccagtgcagggtgcgccaatttccacgtg 271

                                                                       
Query: 181 ttgaggaattcagttcttatccctttggctaatgaccatgtactttgggtctccttttgt 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ttaaggaattcagttcttatccctttggctaatgaccatgtactttgggtctccttttgt 211

                     
Query: 241 catctgattc 250
           ||||||||||
Sbjct: 210 catctgattc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 653
Length adjustment: 9
Effective length of query: 244
Effective length of database: 644
Effective search space:   157136
Effective search space used:   157136
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)