BAC Information

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BAC

Clone NameMSMg01-265K02
Chromosome2 (Build37)
Map Location 77,843,448 - 77,843,616
singlet/doubletsinglet
Overlap geneLOC667920
Upstream gene2610301F02Rik, Sestd1, LOC623706, LOC667906, Zfp533, BC003993
Downstream geneOTTMUSG00000016703, LOC383717, LOC100040476, LOC100040494, 4930401B11Rik, Ube2e3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265K02.T7 (MSMg01no265_k02.b1)MSMg01-265K02.TJ (MSMg01no265_k02.g1)
ACCAG406842AG406843
length1,006769
length of high quality
(start - end)
---169 (132 - 300)
definitionCHROMAT_FILE: MSMg01no265_k02.b1 PHD_FILE: MSMg01no265_k02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:11 2005CHROMAT_FILE: MSMg01no265_k02.g1 PHD_FILE: MSMg01no265_k02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAAAGATAGAATATAAAACTTGGCCCCCATAAAGAATGGGCGGGGGATCC
ACCCTGGGGGGGGGCGGGGGGCTTCGTTAAAATAAATAAAAAAATTTTTT
TTTTTTTTTTTTGGGGGGTGTTATTATTCCGGCGTGTGGGGGGGGGGGGC
CTCCCCCCCGCCGCGCGGGGGGGTATTCACCCCCCCTTTTTTTTTTTTTA
AAAAAAAAACAACATTTTCTCATAATAAACCCCGCCGGGGGCTANCCAAA
AAAAAAAAAACAACACTTTTTTTTCCCCTCCCAAAAAAACATCCCCCCCC
TGTTTTTTAAAAAAAAATTTTTTTTTTTAAAAATTTTTTTCCGCGCTAGT
AAGGTCATTCCCGTNCGTGTAAAAATTTCCACCCCCCTTTTTATTGTCCC
CCGGGGGGGGAAGCGTCACTTTCCCGGGTTGGGCCCCGGTGGGGGGGGTC
CCCCCAAATTTCCTGAAAGGAACCAAAGAAAAGGTAATTTTGGCCAAGAA
TTGTCTTGCCAACTTACACATGAGGAACCCCCCGAAAATCGGGTGGGAAA
AGTCCTGGGAAAAAACCCATTTCAACCCTTCCGAAAACCCCCAAATTGGG
TTTAAATAAACAAAGGGGGGGGGGGGGGGGGTAAAGACCCCTATAAGGGG
GGGGCCCCGAGGGGGGAAAGGGGCCAAGGCTTATAAAGGGGCGCGTAGGG
GAAAAGTGGTGGTAGTATCGGNGGAGGGNGGTCCCCCGCCGAGGTTGGAT
GAGAAACGCGCGCAGGGGTTTCCCGTTTTGAAAGTGGGCGTGGCGCAGAA
AAAGATGGGGTCGCACCCGGGGATTTATAAGGCGGGGGGGGGAAAACACC
CCCCCATGGTGGGGGTGGGTGGGATGAATATGAATAGTGGCCCCGCCGCC
GAGAGAGGGCGCCCTCGCCTATGTGATGTGAGTCCGAAAGAGACGGAAGG
CGGTGGTGTGATCTTTGTTTTTGTTCTTATCACACGANANNCCGCCGGCC
CGCCGC
ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAAATCTTGTCTGCCCTTCATGAAGAAGAGC
AGATCCACAGGAAGAGGCTTTTTGCCCGCCCTTCTACATAAGGACCAGAT
GATACACACATGGCTTCTCTAGAGGCCATGTTTACATACAGAAATAAAAC
ATAAACACTGGTAGGTTTTCCTCATACCTTTAACCGTACTCAACTAGAGT
CTCTGTATCTTATTAGGAGGATTGAGCTTATGAATTATGAAGACTATTAG
AGCCAGAGCATGGATGATAAAATATATCCCTTTGCTACTTATAGATCTAT
TTTGTTCCTAAAGCTGTATTTTTTAAGATCTTAGCTGCAATAGGCCCTTC
CTTGTAGCCTATAATCTTAAATCTCCACTGAGACACTGACTGCTCCAGCT
GACCTGTTTAACTGGGTTTGCACGTGTGGTAAACTATGTGAAGCTGCTTA
GTTACATAGACAGAGAGAGCTTTAGTCCCTTGTACTCACAACTTCCGAGA
GGNGCTTGATTACAAAGAGTGAAGACACTGGGGTGGGGTTTGTCGAGACA
CCTCACGGCTATGCCTGGTAGTGCTGGCCATGCCTTCTTGAATCTGAAAG
GTAACTTCCAAGTTGGCCTATCCTTGAAATGAAATGCCCATGGGGTTTTT
GAATAGCTGAACATATGAATTTGAAAGAAAGGCCGAAAATGAAATGTTAT
TGTCAAGGGTCCCCAAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_k02.g1 MSMg01no265_k02.g1 CHROMAT_FILE:
MSMg01no265_k02.g1 PHD_FILE: MSMg01no265_k02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:11 2005
         (169 letters)



>mm_chr2_77843248_77843816
          Length = 569

 Score =  327 bits (169), Expect = 2e-94
 Identities = 169/169 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctacataaggaccagatgatacacacatggcttctctagaggccatgtttacatacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ttctacataaggaccagatgatacacacatggcttctctagaggccatgtttacatacag 310

                                                                       
Query: 61  aaataaaacataaacactggtaggttttcctcatacctttaaccgtactcaactagagtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 aaataaaacataaacactggtaggttttcctcatacctttaaccgtactcaactagagtc 250

                                                            
Query: 121 tctgtatcttattaggaggattgagcttatgaattatgaagactattag 169
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 tctgtatcttattaggaggattgagcttatgaattatgaagactattag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 569
Length adjustment: 8
Effective length of query: 161
Effective length of database: 561
Effective search space:    90321
Effective search space used:    90321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)