BAC Information

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BAC

Clone NameMSMg01-265L09
Chromosome2 (Build37)
Map Location 23,905,597 - 23,905,940
singlet/doubletsinglet
Overlap genenone
Upstream geneAcbd5, Mastl, Yme1l1, 4931423N10Rik, LOC664835, Nxph2, LOC664822, 4921517N04Rik, LOC100039149, Sh3d2c-ps1, Hnmt
Downstream geneTbpl2, Il1f8, LOC215253, Il1f9, Il1f6, LOC620156, Il1f5, Il1f10, Il1rn, Psd4, Pax8, LOC433410, LOC664938, Cacna1b, Ehmt1, Arrdc1, Zmynd19, Wdr85, Mrpl41, Pnpla7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-265L09.T7 (MSMg01no265_l09.b1)MSMg01-265L09.TJ (MSMg01no265_l09.g1)
ACCAG406899AG406900
length726749
length of high quality
(start - end)
328 (9 - 336)345 (77 - 421)
definitionCHROMAT_FILE: MSMg01no265_l09.b1 PHD_FILE: MSMg01no265_l09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:18 2005CHROMAT_FILE: MSMg01no265_l09.g1 PHD_FILE: MSMg01no265_l09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:03:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCCTATAGGGAGAGGATCCGCGGAATTCTCCTCTAAAGAAACAGACTTG
GAGGAGGAAGCAGCTCGTTATGAGAGAAAAGGGTACCAGGCAGATAAAAT
GCTAGCTAATCAGTTAAGGAAAAAGCCAAAAGCGGCTGGCGAAGGCCAGC
ATGCTGCTCGGCCTCCGGGCAGTCAGCTTCAAGGTCATAGTGCACCTCCG
CCCTATGCGGAGCCCCCACCCTGCGTAAGGCGTCAGCCCTGCGCAGAGAG
GCAATGGACAGAGAGGCAATGGCAGACTCGTTCATTCCTAGAGAGGAACT
AAGGAAAATGCAACAGGCATTTCCGGTCTTTGAAGGATTTTTATTTGGCC
CCGCCCCACGCTCCGGTAGAGTATGTGCAGATTAAAGAGCTTGCCCAGTC
GGTCAGTAAATATGGAACCAATGCTAATTTTACCTTGGTGCAGTTAGACA
GGCTTGCCGGCATGGCACTAACTCCTGCCGACTGGCAAATGATTGCCAAA
GCCGCTCTCCCTAGTATGGGCAAATATATGGAATGTATAGCTCTATGGCA
AGAGGCTGCACAAGCGCATGCCTGAACAAACGCTGCTGCTTTGACTCCCG
AGCAGAGAGATTGGACTTTTTGACTTGTTAACTGGTCAGGTAGCTTATAC
TGCTGATCTAACAAACTACCACTGGTGGAGCTTATCCCCAAATTTCCTCC
ATGTTTAATAAGGGCCTGGAAGGCGN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAAATCCATTTCCTTGGACCTCCTA
GATAGTACTCCCATTCCAATTTGTCTAAACTAAACAAACTGTATCCAAAT
AATCTTGAAAGGAAAACACACAAATGCTAAATTAATCACACACACACACA
TACATATACACACGGGAAGAAATTCTTTAACACCCAAAACATATGGAGAA
TTTCCAAACATTACCTTTCAAGGATGCTTTGAACATTGTTAAGACTCCTA
ATCAAAATTATTATTTTGATTCCAATTTCTTTGTCTAAACTTAAACTCCC
AGTAACAATGCAGGGACTTGCTTGTTTATGGCATTTTCAATACACAAAAA
AGATCATGCTTGTCTATGACCGCTGGTATCAGGACATCTGAAACTCTGGA
TATCACATAGGTGCGACCCACACACCTGTTGCCAAGGCAACATCCACCAT
ATTCCCAGAATCTACTTGGCTCACCTCCCACCTTTACCTGTTACTATGTC
ACCACCCATATACAAAGGAAGGCCCCTCTGATCTCTCTCTCTCCCCACCC
CACCCCCTTATCTTTTCTGCTGCCACCATGCCCTTTTCTCTCTCAATAAA
CCCACGTGGAAATGTTTGACCTGCTGTGATCTTTCTGGACTCACCTGATG
ATCACAACAATGACTGTGCTCATTTGTTTCATTTGTTGAATGAAAATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no265_l09.g1 MSMg01no265_l09.g1 CHROMAT_FILE:
MSMg01no265_l09.g1 PHD_FILE: MSMg01no265_l09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:03:18 2005
         (345 letters)



>mm_chr2_23905397_23906141
          Length = 745

 Score =  634 bits (328), Expect = 0.0
 Identities = 340/344 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatccatttccttggacctcctagatagtactcccattccaatttgtctaaactaaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatccatttccttggacctcctagatagtactcccattccaatttgtctaaactaaaca 260

                                                                       
Query: 61  aactgtatccaaataatcttgaaaggaaaacacacaaatgctaaattaatcacacacaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aactgtatccaaataatcttgaaaggaaaacacacaaatgctaaattaatcacacacaca 320

                                                                       
Query: 121 cacatacatatacacacgggaagaaattctttaacacccaaaacatatggagaatttcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacatacatatacacacgggaagaaattctttaacacccaaaacatatggagaatttcca 380

                                                                       
Query: 181 aacattacctttcaaggatgctttgaacattgttaagactcctaatcaaaattattattt 240
           ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 381 aacattacctttcaaggatgctttgaacattgttaagactcttaatccaaattattattt 440

                                                                       
Query: 241 tgattccaatttctttgtctaaacttaaactcccagtaacaatgcagggacttgcttgtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgattccaatttctttgtctaaacttaaactcccagtaacaatgcagggacttgcttgtt 500

                                                       
Query: 301 tatggcattttcaatacacaaaaaagatcatgcttgtctatgac 344
           ||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 501 tatggtattttcaatacacagaaaagatcatgcttgtctatgac 544


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)