BAC Information

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BAC

Clone NameMSMg01-266G18
Chromosome2 (Build37)
Map Location 146,547,189 - 146,715,552
singlet/doubletdoublet
Overlap geneLOC668918, Gm114
Upstream geneLOC100043810, Rin2, Nat5, Crnkl1, 4930529M08Rik, LOC100043563, Insm1, A230067G21Rik
Downstream geneXrn2, Nkx2-4, Nkx2-2, LOC100043816, LOC668919, LOC668920, Pax1, LOC640914, A530006G24Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266G18.T7 (MSMg01no266_g18.b1)MSMg01-266G18.TJ (MSMg01no266_g18.g1)
ACCAG407414AG407415
length777755
length of high quality
(start - end)		277 (45 - 321)677 (77 - 753)
definitionCHROMAT_FILE: MSMg01no266_g18.b1 PHD_FILE: MSMg01no266_g18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:12 2005CHROMAT_FILE: MSMg01no266_g18.g1 PHD_FILE: MSMg01no266_g18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,547,189 - 146,547,461)(146,714,876 - 146,715,552)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAACAGAGAAATGGGCTAAAAGAAACCGGAGTATCAGGGGGGAGGGG
AAGGAGGCGGGTTCGAAAGAAGAACTCCACAGCCTTTCTTCAGATGGGTT
TAATTTTGTCACTTGAGTCAAAATTGGAAACCCGTTTTCTAGTACAATTG
CTTCTGTGTTTAGTGAGTGTTGCAGACTCTTTATTACAGGGGAATTTTAT
AAACTTGTCACCTCATCATCAAGCCATCTTGGGGGTCAACTTCCCACTTG
TACTTTTAGCTCTAAAGCAAGTTCTTTATAAAAGTGTCTTCTGATTTGTA
AGATTTACCATATTTTTTTTTTACCCCCTTCCAACCCCAATCGCTTACTG
AATTATTTATTTGTCCCCCCCCTTTTAAAAAAAAAAAAAANTGTTAAGTC
GTATCGTATGCCATATAATTCTTTAATAATGCATCAAATATTATTGTATA
TTCGTGTTATTTCTGCCCTTTGTTTCGCCACCGCTGTTCTCCCCTCTCCC
TATTTTTCCCCCCCTTTATCTTCCCTTTTTTCTACCCCTCACCCCTCTCT
TTCTTTCTCCCCTCTCTTTTTTATTTTCTTCTCACCCACATTCCTCCTTC
TTACCCCTTTTTTTTCCTTTTTTTTCTTCCCTTCTCCTCCTTTATACTCT
TATCCTTCTTCTTCCTTCTTACTATTTTTCTTCCCTCCGTTTTGAACATT
TTATAACCTCTCTCTTTACATATTCTG

CGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATCTTTTGAAACATTTCTATAAAC
ACATATAAGAAGTCATTAGGATGAAACTCATTAAGTCACTTCTTTGTTCA
ATGAGAAATTTATAGATCACAGTGAGAAAAGGAGGCACTATGAAAATCAA
TAAACAAACTCGGTCTGTCATCTCACCTGAGGAAGCTTCCCAAGCAGAAT
GCTTCTCTCCAGCCCACTTCTTTGCAGATGTACAGTGTTCTGAAGCTGCC
ATCATGGGGACCAGCGGGCCGGCTCTTTCTTCCCTGACTTCAATATGTTC
TTGTGTCAGTATTTCTCTGTCTGATCCCTCCGACCTGCTGGAACTGTCAC
ACTTTAAATCAGTGATGCCGCCCTCTGGACTTAATCTTTCCTGTAACGAG
GAATGGAGTTCAGCAGACTTTCTGCCTTCAGATAAATTACTCTTGCTGTG
CTGTGTGCTGCTTCCTATCTCCAAGCAATGAGTTTGTTCTTCTGCAGACA
ATACATAGCTTGTGACTGGCGCCTTCTCACCAGTCTGAAGAGATGTCTTT
CCATGTATTTTGTCAGACTTATTTAAGCACTGTGTGTCACCATTAGTCTG
CACTACACAGCTGTCTGTCACACAGCTGCTCTGGGCTGTCTGTTGGTGTG
AATGTGGGTCAGAGATTGAAAAGTTCTTTGTGGGTTGGTTAGATTTCAGC
TCTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_g18.b1 MSMg01no266_g18.b1 CHROMAT_FILE:
MSMg01no266_g18.b1 PHD_FILE: MSMg01no266_g18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:12 2005
         (277 letters)



>mm_chr2_146546985_146547661
          Length = 677

 Score =  520 bits (269), Expect = e-152
 Identities = 272/273 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaacagagaaatgggctaaaagaaaccggagtatcaggggggaggggaaggaggc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaacagagaaatgggctaaaagaaaccggagtatcaggggggaggggaaggaggc 264

                                                                       
Query: 65  gggttcgaaagaagaactccacagcctttcttcagatgggtttaattttgtcacttgagt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gggttcgaaagaagaactccacagcctttcttcagatgggtttaattttgtcacttgagt 324

                                                                       
Query: 125 caaaattggaaacccgttttctagtacaattgcttctgtgtttagtgagtgttgcagact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caaaattggaaacccgttttctagtacaattgcttctgtgtttagtgagtgttgcagact 384

                                                                       
Query: 185 ctttattacaggggaattttataaacttgtcacctcatcatcaagccatcttgggggtca 244
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 385 ctttattacaggggaattttataaacttggcacctcatcatcaagccatcttgggggtca 444

                                            
Query: 245 acttcccacttgtacttttagctctaaagcaag 277
           |||||||||||||||||||||||||||||||||
Sbjct: 445 acttcccacttgtacttttagctctaaagcaag 477


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space:   179024
Effective search space used:   179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no266_g18.g1 MSMg01no266_g18.g1 CHROMAT_FILE:
MSMg01no266_g18.g1 PHD_FILE: MSMg01no266_g18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:12 2005
         (677 letters)



>mm_chr2_146714676_146715752
          Length = 1077

 Score = 1270 bits (657), Expect = 0.0
 Identities = 672/677 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcttttgaaacatttctataaacacatataagaagtcattaggatgaaactcattaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 atcttttgaaacatttctataaacacatataagaagtcattaggatgaaactcattaagt 818

                                                                       
Query: 61  cacttctttgttcaatgagaaatttatagatcacagtgagaaaaggaggcactatgaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 817 cacttctttgttcaatgagaaatttatagatcacagtgagaaaaggaggcactatgaaaa 758

                                                                       
Query: 121 tcaataaacaaactcggtctgtcatctcacctgaggaagcttcccaagcagaatgcttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 tcaataaacaaactcggtctgtcatctcacctgaggaagcttcccaagcagaatgcttct 698

                                                                       
Query: 181 ctccagcccacttctttgcagatgtacagtgttctgaagctgccatcatggggaccagcg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 ctccagcccacttctttgcagatgtacagtgttctgaagctgccatcatggggaccagcg 638

                                                                       
Query: 241 ggccggctctttcttccctgacttcaatatgttcttgtgtcagtatttctctgtctgatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 ggccggctctttcttccctgacttcaatatgttcttgtgtcagtatttctctgtctgatc 578

                                                                       
Query: 301 cctccgacctgctggaactgtcacactttaaatcagtgatgccgccctctggacttaatc 360
           |||| || |||||||||||||||||||||||||||||||||| |  ||||||||||||||
Sbjct: 577 cctctgatctgctggaactgtcacactttaaatcagtgatgctgttctctggacttaatc 518

                                                                       
Query: 361 tttcctgtaacgaggaatggagttcagcagactttctgccttcagataaattactcttgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 tttcctgtaacgaggaatggagttcagcagactttctgccttcagataaattactcttgc 458

                                                                       
Query: 421 tgtgctgtgtgctgcttcctatctccaagcaatgagtttgttcttctgcagacaatacat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 tgtgctgtgtgctgcttcctatctccaagcaatgagtttgttcttctgcagacaatacat 398

                                                                       
Query: 481 agcttgtgactggcgccttctcaccagtctgaagagatgtctttccatgtattttgtcag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 agcttgtgactggcgccttctcaccagtctgaagagatgtctttccatgtattttgtcag 338

                                                                       
Query: 541 acttatttaagcactgtgtgtcaccattagtctgcactacacagctgtctgtcacacagc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 acttatttaagcactgtgtgtcaccattagtctgcactacacagctgtctgtcacacagc 278

                                                                       
Query: 601 tgctctgggctgtctgttggtgtgaatgtgggtcagagattgaaaagttctttgtgggtt 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tgctctgggctgtctgttggtgtgaatgtgggtcagagattgaaaagttctttgtgggtt 218

                            
Query: 661 ggttagatttcagctct 677
           |||||||||||||||||
Sbjct: 217 ggttagatttcagctct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 677
Length of database: 1077
Length adjustment: 10
Effective length of query: 667
Effective length of database: 1067
Effective search space:   711689
Effective search space used:   711689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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