BAC Information

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BAC

Clone NameMSMg01-266J24
Chromosome2 (Build37)
Map Location 88,874,042 - 89,035,324
singlet/doubletdoublet
Overlap geneOlfr1218, Olfr1219, Olfr1220, Olfr1221, Olfr1222, Olfr1223, Olfr1224-ps1, Olfr1225, LOC435676, Olfr1226
Upstream geneOlfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1, Olfr1188, LOC668528, Olfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1, Olfr526-ps1, Olfr1192-ps1, Olfr1193, Olfr1194-ps1, Olfr1195, Olfr1196, Olfr1197, Olfr1198, Olfr1199, Olfr1200, Olfr1201, Olfr1202, Olfr1203, Olfr1204, Olfr1206, Olfr1208, Olfr1209, Olfr1211, Olfr1212, Olfr1213, Olfr1214, Olfr1215, Olfr1216, Olfr1217
Downstream geneLOC100042983, GA_x5J8B7TTH1T-1160-261, Olfr1227-ps1, Olfr1228, Olfr1229, Olfr1230, Olfr1231, Olfr1232, Olfr1233, Olfr1234, Olfr1235-ps1, GA_x5J8B7W62NC-668773-668438, Olfr1237-ps1, Olfr1238, Olfr1239, Olfr1240, Olfr1241, Olfr1242, Olfr1243, Olfr1244-ps1, Olfr1245, Olfr1246, Olfr1247, Olfr1248, Olfr1249, Olfr1541-ps1, Olfr1250, Olfr1251, GA_x5J8B7TT7VM-20-924, Olfr1252, GA_x5J8B7W62NC-992588-991951, Olfr1253-ps1, Olfr1254, Olfr1255, Olfr1256, Olfr48, Olfr1257, Olfr1258, Olfr1259, Olfr1260, Olfr1261, Olfr1262, Olfr1263, Olfr1264, Olfr1265, Olfr140, Olfr1266-ps1, Olfr1267-ps1, Olfr1268-ps1, Olfr1269, Olfr32, LOC100043090, Olfr1270, LOC627525, LOC100043096
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266J24.T7 (MSMg01no266_j24.b1)MSMg01-266J24.TJ (MSMg01no266_j24.g1)
ACCAG407559AG407560
length761759
length of high quality
(start - end)		326 (45 - 370)296 (75 - 370)
definitionCHROMAT_FILE: MSMg01no266_j24.b1 PHD_FILE: MSMg01no266_j24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:27 2005CHROMAT_FILE: MSMg01no266_j24.g1 PHD_FILE: MSMg01no266_j24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,035,006 - 89,035,324)(88,874,042 - 88,874,333)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCANAAATCCGCGG
AATTCTTATAAATTATACAGCATGTGACTTGGGAAATAAGTCAGAAGACT
CTAAATTATATTTGAGAGGAAATTTCTTTTTTTCAGCTTTGTGTTGTCGT
GAGTTTTCATTTGTAGGTGACTGGTCCATGGCTTTCTGACTCTTCATTAT
TGACTCTATTGCCTTTACTGGGATATGCTATTTACATAAGTACAAAGGAA
GAAGACGCTTTAAGAATAAAAGAAACTAGAAAGAAACATCCCTTCCTAGA
AGTTCTTACAGGGGAAAAAATCACTCTTCACCTTGGATGTCACAGTTGTG
TCTCTAAATTTCTAAGTTTATTCTCTTTTGCCCGCTTAATCATGACAGTT
TTGATGTTGACTTTTGCAGACACCCCACACAGAAAACTCTGCTGACTAAG
ATTAGGACTTTAGGTCTGGAACAATTGCTTTTGTGTTTGGTTGAATTTTT
ATTATTTGTTTGTTTGCTCCCCCTCCCTCTTTTCTTTTTCTCTCTCCCCC
CCTCTNCTTTCTTTTTCCTCTCCTCCTTCCTCTTCTTCCCCTCTCTCCCC
TTTTTTCTCTTTTTTTTCCCTCCTTCCCCCCTTTTTTTTTTTTCCTTCCC
CCCCCCTTTTTTTCTCTTCCTTTCCCTTCCTTTCTTCTTCTTCTTTCCCC
CTCTCTTTTTTCCCCCCCCCCCTTTTCTCTCTTTTTCTATTCTTCTTTTT
CTCTCCTCCCT

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATTTCCAAGCATTCTGATGGTACATG
GTGGCTCATACCTTTAGTATCACCACCAAGGAGGCACAGGAAAAGTCTAC
TTCTGTGAAGTTTAAACAACATGGACTATGTAAACATTTAGGCCAGCCAG
AGCTATATAGTGATCCCCTGTATCAAAAAGAATTTTAAATTAGTATTCAC
AGTATCTACAATAAATATATTATGTATTAGCAAAGTGTTATGCTGTTAGA
ATATTAAAACTCTTTTAATAATTTAATTATACCTAAACAAAGTCAAATAG
TGAATGAAATAAAATATTTAATATTTACCCCCCCCCCCCATAAAACCTTA
GCTAAATTGTAATCCTTAAACAACTATGAACATAAATAGCTTCAAGTAAT
TATCTACCAGCTAAAAATTTTCATTTATTTTGTTCTGACATATTATTTCC
AAGTTTCATAAGTAGACACTTGGAGTTAAGATACAAAATAATGTTTGAAA
TCAATGTACCATTGAACAAAGTGAATCTGTTTGGTTCCTATGTAGTGCTC
AAAGAAATATTTTATTTCATAGTTTAATTTCCTACATTGGAAGTACAACT
TCATAGAGCAACTAAACAACCACTATTAGATCTTTATTTCTTAAGTTAAT
TCTTATGTCCTTAATGATAAGAAGATCTATGCACAGGACAACAACTTGAC
TGTTTAAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_j24.b1 MSMg01no266_j24.b1 CHROMAT_FILE:
MSMg01no266_j24.b1 PHD_FILE: MSMg01no266_j24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:27 2005
         (326 letters)



>mm_chr2_89034801_89035526
          Length = 726

 Score =  601 bits (311), Expect = e-176
 Identities = 317/319 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattcttataaattatacagcatgtgacttgggaaataagtcagaagactctaaattat 65
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 gaattcttataaattataaagcatgtgacttgggaaataagtcagaagactctaaattat 465

                                                                       
Query: 66  atttgagaggaaatttctttttttcagctttgtgttgtcgtgagttttcatttgtaggtg 125
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 atttgagaggaaatttctctttttcagctttgtgttgtcgtgagttttcatttgtaggtg 405

                                                                       
Query: 126 actggtccatggctttctgactcttcattattgactctattgcctttactgggatatgct 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 actggtccatggctttctgactcttcattattgactctattgcctttactgggatatgct 345

                                                                       
Query: 186 atttacataagtacaaaggaagaagacgctttaagaataaaagaaactagaaagaaacat 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 atttacataagtacaaaggaagaagacgctttaagaataaaagaaactagaaagaaacat 285

                                                                       
Query: 246 cccttcctagaagttcttacaggggaaaaaatcactcttcaccttggatgtcacagttgt 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 cccttcctagaagttcttacaggggaaaaaatcactcttcaccttggatgtcacagttgt 225

                              
Query: 306 gtctctaaatttctaagtt 324
           |||||||||||||||||||
Sbjct: 224 gtctctaaatttctaagtt 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space:   227289
Effective search space used:   227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no266_j24.g1 MSMg01no266_j24.g1 CHROMAT_FILE:
MSMg01no266_j24.g1 PHD_FILE: MSMg01no266_j24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:27 2005
         (296 letters)



>mm_chr2_88873842_88874537
          Length = 696

 Score =  565 bits (292), Expect = e-165
 Identities = 292/292 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttccaagcattctgatggtacatggtggctcatacctttagtatcaccaccaaggagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttccaagcattctgatggtacatggtggctcatacctttagtatcaccaccaaggagg 260

                                                                       
Query: 61  cacaggaaaagtctacttctgtgaagtttaaacaacatggactatgtaaacatttaggcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacaggaaaagtctacttctgtgaagtttaaacaacatggactatgtaaacatttaggcc 320

                                                                       
Query: 121 agccagagctatatagtgatcccctgtatcaaaaagaattttaaattagtattcacagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agccagagctatatagtgatcccctgtatcaaaaagaattttaaattagtattcacagta 380

                                                                       
Query: 181 tctacaataaatatattatgtattagcaaagtgttatgctgttagaatattaaaactctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctacaataaatatattatgtattagcaaagtgttatgctgttagaatattaaaactctt 440

                                                               
Query: 241 ttaataatttaattatacctaaacaaagtcaaatagtgaatgaaataaaata 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaataatttaattatacctaaacaaagtcaaatagtgaatgaaataaaata 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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