BAC Information

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BAC

Clone NameMSMg01-266O02
Chromosome2 (Build37)
Map Location 96,123,653 - 96,123,966
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042843
Downstream geneLOC100043267
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-266O02.T7 (MSMg01no266_o02.b1)MSMg01-266O02.TJ (MSMg01no266_o02.g1)
ACCAG407751AG407752
length733739
length of high quality
(start - end)
318 (45 - 362)613 (77 - 689)
definitionCHROMAT_FILE: MSMg01no266_o02.b1 PHD_FILE: MSMg01no266_o02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:47 2005CHROMAT_FILE: MSMg01no266_o02.g1 PHD_FILE: MSMg01no266_o02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:04:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACCAACACAAACTTCTGTTTTGTTGCTTTATTCTAACAGAAGAGCT
CTGCCATTCTCTGACATCTCTGGCTGAGGGAGAGATTGTGCAGGTCGCTT
CAAACACAGCTCAGTCAAAAGTGTGGTGAGCTGATGCTCGATCTGTACTG
TTTCTGAAAATCAAAGAGAAGTGTAGTCAGTTGTCGGCAATCTGAATCAC
TCTACTTGAAAAATTATGCCCACCCTTTGATTCAAACCCTAGTACGTCTT
CAAAAATATATGATTTTCATGTGTTCTTTAAAGGTTGATAGAAATAAGTT
AAAATCCAATATAGTATTTAACCGCCCCCCCCCTGTCTAGCTCTGGAAGT
TTGCTACAATGGAAGCTCCTTATGTGTAGAATCTATTTTAAGCACCTGGT
GAATCATTTCAGCCATGCTAATGACATCAAATAACAGACTTTGAAATCAT
TTTAATGCTATTACCCTTACTTATTTAGTAGTTATGATATTTAGGATTAG
CCCCAAGACAGAATTAAATAAAAATTTCTAAGGTTTTGGGGAATTTCCAT
AGTCATACCTGTTTACGGTTCACTTGCAACTGCTCCATTTAAAACTTGAG
ATGTTGGCAATTTTAAGGCCCATGATATGATCAATGTCATATGTAATTAA
CACACATACTTGAATTTCTTACAGAAGCCAGAA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACATAAAACGAGAAACACTGAAA
TTTAGAGAGGAGAAAGTGGGGAAAACTCTCAAAGAAATAGGCACAGGGGN
GAAAATTCCTAAACAGAACAGCAATGGCCTGTGCTGTAAGATCAAGAATC
GAGAAATGGGACCTCATAAAATTTCAAAACTTCTGTAGGACAAAAGATAC
TGTCAATAAGACAAAAAGTCCACCAACAGATTGGGAAAGAATTTTTACCA
ATCCTAAATCTGATAGGGGACTAATATCCAATATATACAAAGAGCTCAAG
AAGCTGAACTCCAGGAATTCAAATAACCCCATTAAAAATGGGGTACAGAG
CTAAACAAAGAATTCTCAACTGAGAAATACCAAAGGGCTGAGAAGCACTT
GAAAAAATGTTGAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAA
CCCTGAGATTCCACCTCACACCAGTCAGAGTGGCTAGGATCAAAAATTCA
GGTGACAGCAGATGCTGGTGAGGATGCTATTAAAAACAATGAATTTCTGA
AATTCTTGGGCAAACTGATGCATCTGGAGGATATCATCCCGATCCCAAAA
GAAGTCACTTGCTATTCACTCACTGATAAGTGGCTATTAGCCCAGAAACC
TAGAATACCCAAGATACAACTTCCAAAATAGAAGATAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no266_o02.b1 MSMg01no266_o02.b1 CHROMAT_FILE:
MSMg01no266_o02.b1 PHD_FILE: MSMg01no266_o02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:04:47 2005
         (318 letters)



>mm_chr2_96123449_96124166
          Length = 718

 Score =  576 bits (298), Expect = e-169
 Identities = 310/314 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaccaacacaaacttctgttttgttgctttattctaacagaagagctctgccatt 64
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 518 gaattcaccaacacaaacttctgttttgttgctctattctaacagaagagctctgccgtt 459

                                                                       
Query: 65  ctctgacatctctggctgagggagagattgtgcaggtcgcttcaaacacagctcagtcaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ctctgacatctctggctgagggagagattgtgcaggtcgcttcaaacacagctcagtcaa 399

                                                                       
Query: 125 aagtgtggtgagctgatgctcgatctgtactgtttctgaaaatcaaagagaagtgtagtc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 aagtgtggtgagctgatgctcgatctgtactgtttctgaaaatcaaagagaagtgtagtc 339

                                                                       
Query: 185 agttgtcggcaatctgaatcactctacttgaaaaattatgcccaccctttgattcaaacc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 agttgtcggcaatctgaatcactctacttgaaaaattatgcccaccctttgattcaaacc 279

                                                                       
Query: 245 ctagtacgtcttcaaaaatatatgattttcatgtgttctttaaaggttgatagaaataag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 278 ctagtacgtcttcaaaaatatatgattttcatgtgttctttaaaggttgatggaaatcag 219

                         
Query: 305 ttaaaatccaatat 318
           ||||||||||||||
Sbjct: 218 ttaaaatccaatat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)