Query= MSMg01no267_g13.b1 MSMg01no267_g13.b1 CHROMAT_FILE:
MSMg01no267_g13.b1 PHD_FILE: MSMg01no267_g13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:28 2005
(314 letters)
>mm_chr2_117755803_117756516
Length = 714
Score = 584 bits (302), Expect = e-171
Identities = 305/306 (99%)
Strand = Plus / Minus
Query: 5 gaattcctgacctgcccactgctgcttcccgtcagagagatgttcaaagcccaccatcct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 gaattcctgacctgcccactgctgcttcccgtcagagagatgttcaaagcccaccatcct 451
Query: 65 ctgtctcgggaaggctggtcctggtgttttctcttgattcctctacagctgcagagaaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 ctgtctcgggaaggctggtcctggtgttttctcttgattcctctacagctgcagagaaaa 391
Query: 125 gctgttgggacttgaagagctgcatatgctgacatgtttagaattaggttatcactctct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gctgttgggacttgaagagctgcatatgctgacatgtttagaattaggttatcactctct 331
Query: 185 ggaaagttttgcgctgcgtttaagttcatgaaaagtcatgttttcaccacctcagggggc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ggaaagttttgcgctgcgtttaagttcatgaaaagtcatgttttcaccacctcagggggc 271
Query: 245 ccgacgcaaacatgtggaagatttctgcccgagtctgtttggaagctttggatggatgaa 304
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ccaacgcaaacatgtggaagatttctgcccgagtctgtttggaagctttggatggatgaa 211
Query: 305 agatgc 310
||||||
Sbjct: 210 agatgc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space: 215025
Effective search space used: 215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no267_g13.g1 MSMg01no267_g13.g1 CHROMAT_FILE:
MSMg01no267_g13.g1 PHD_FILE: MSMg01no267_g13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:05:28 2005
(611 letters)
>mm_chr2_117580751_117581760
Length = 1010
Score = 963 bits (498), Expect = 0.0
Identities = 580/612 (94%), Gaps = 12/612 (1%)
Strand = Plus / Plus
Query: 1 atgtctgtaagtagttaaaattattatttttagttttctttaaaaacataatttgctatt 60
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 201 atgtctgtaagtagttaaaattattatttttagttatctttaaaaa-ataatttgctatt 259
Query: 61 gttccattgttaaaagagtatgtaaatttgtaaatttccatatgttaaagagatagttta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gttccattgttaaaagagtatgtaaatttgtaaatttccatatgttaaagagatagttta 319
Query: 121 taggaaa-taatgatttagtttgccaacagattgcacatggatattttaatggacagtac 179
| ||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct: 320 t-ggaaaataatgatttagtgtgccaacagattgcacatggatattttaatggccagtac 378
Query: 180 tatttatggagtatcctcatgtgttttctcagagcagaactcccctgaagacctcatgat 239
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 379 tatttatggagtatcctcatgtgttttctcagagcagaactccactgaagacctcatgat 438
Query: 240 gtcttgactcacaagactgttcccctaagtattgctgttcacagtgtatgcccctgccaa 299
|||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||
Sbjct: 439 gtcttgactcacaagattgtgcccctaagtattgctgttcacagtgcatgcccctgccaa 498
Query: 300 gaaatcccagttcatttgtctatagaatgaaatacttgtgcttccaacatgctttctgtc 359
||||| ||||| | ||||||||||| |||||||||| |||||| || | ||||||||||
Sbjct: 499 gaaattccagtccgtttgtctatagtatgaaatactcgtgctttgaagacgctttctgtc 558
Query: 360 tattcagaaatagaaataaatcaatagccttttaataataataataataataataatggg 419
|||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 559 tattcagaaatagaaataaatcaatagccttt-aa--------ataataataataatggg 609
Query: 420 aataatttgtaaaataaaaatctaaacacatgcataaaacactcttcttgacatcaaaga 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 aataatttgtaaaataaaaatctaaacacatgcataaaacactcttcttgacatcaaaga 669
Query: 480 attcataacttttgcacatattcaatgtatgtttcacagtttcatttaacgggcacatat 539
| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 670 actcataacttttgcacatattcaatgtatgtttcacagtttcatttaacagccacatat 729
Query: 540 gtatgcacatatagacacatatccttagcatagaagcaatcctcaggagaaagtatttct 599
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 730 gtatgcacatatagacacatatccttagcatagaaacaatcctcaggagaaagtatttct 789
Query: 600 gaggctctaacc 611
||||||||||||
Sbjct: 790 gaggctctaacc 801
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1010
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1000
Effective search space: 601000
Effective search space used: 601000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
