BAC Information

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BAC

Clone NameMSMg01-268J08
Chromosome2 (Build37)
Map Location 126,386,687 - 126,386,810
singlet/doubletsinglet
Overlap geneSlc27a2
Upstream geneCep152, Shc4, Eid1, 3110001I20Rik, Cops2, Galk2, Fgf7, Dtwd1, Atp8b4
Downstream geneHdc, Gabpb1, Usp8, LOC100043714, Usp50, Trpm7, 2010106G01Rik, Ap4e1, Blvra, Ncaph, 1700041B20Rik, 1810024B03Rik, LOC100043408, Ascc3l1, Ciao1, Tmem127, ENSMUSG00000074822, Stard7, Dusp2, Astl, Adra2b, A530057A03Rik, Fahd2a, Kcnip3, Prom2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268J08.T7 (MSMg01no268_j08.b1)MSMg01-268J08.TJ (MSMg01no268_j08.g1)
ACCAG408959AG408960
length720720
length of high quality
(start - end)
124 (112 - 235)284 (73 - 356)
definitionCHROMAT_FILE: MSMg01no268_j08.b1 PHD_FILE: MSMg01no268_j08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:53 2005CHROMAT_FILE: MSMg01no268_j08.g1 PHD_FILE: MSMg01no268_j08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:06:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCCGCTAAACGACTCCTATAGTCCGCACTGCGCGGAATTCTCGCATG
TGTCTTAAACTTTACAAAAATGGCCTTTATGTGTGGTGTGTTCTGGAAAT
GTTTATTGCTGCTTCAGCGATATGCACTGAAACTGTTTGGGTTTTGCCTA
ATGCACGTTTCTGTGATGTCTTCTACGAACCATCAGCTGAGTTCAGGAAA
CCATCAGGACTCAACTTTAATTCTTTCAGATATTGGATTGTAGGTGGGGT
ATATGTGTGTGNNNNNTNNNNNNNNNTNTNNTNTTNNNTNNNNNNNCNNT
TTTTTTTAATTTTNNANNANNNNNNNNNNNNNNNNNNNNNNTTTTTNATT
TTTTCCCCCCCCCCCCCCCCNAAAAANAANAAAAANAAANNNNNNNNNNN
NNNCGCCCAAAAAAAAAAAAAAAAANNGGGGGGGGGGGGGGGCNCCCCCC
CCCCCCCCCCCCCCCGCCGGCAGGGGGGGCCCCCCCCCCCCCCGCGCCCC
GCGCGCCGGCCNNCCGCGCAGCCCCCGCCCGCCCCCCGCGGCCGCCCCGC
CAAACCAAAAACCGAAACAAAACACAAACGAAACCGACCACGCGANAACA
CCCGCACGCAGGAAACCCACCAACACCACGACCAAACAATTTTTTTTTTT
TTTTTTCATCAACACGACGCCATTTCGTTTTTCGTTCTAGAAACAGCCTT
CCAACTTATTACATATAGCG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTAGTCATCAGAGAGTGGCACTATTTGA
GAGGGATTAGAAAGATCAACACGTGTGGCCTTATTGGAGGAAGATATAAT
TGGGGGTAGGCATTGACCTTTCAAAAAGCCCACACCTGACTCTGGCAAGG
AGAACAGATAGACTAACTGCAGATCTTCACTTATCCTTCCTCTCTTCCGA
ATCCAGTGCCTCGGGTTTGTTCCCAGCTTGTAGCAGATCACATGCTGCAG
TCTTGACCCCTGCTCCATTTCCAGTGGATTATACAGATCTTCTCCTTCAC
TCCCCCTTTNCCTTAAGTATCCTCCCCCCCCTATCCTAGCCTCAGGCTAG
GGAAGAAGTCATCACCTCTTCCACAACACAAACAAATCCATCTTCCAGTC
TCATCCCCAGCTCGTAGCAGTCCATATGTTGTGGACTAACTTCCTCCTTC
TCCAGCCAGTCATACAGATCTCCCCCTCCAACCTTTCATCCCCCCAAATC
ATCACTCTATCCCACTCCCCAGTTCCAGAAGGCACTCCCTGGGAATCTGT
GGGGAACCTAACTGTATTTTTATCTCTTCTCTCTTCCAAATCCATTGCCC
CTGTTTCACCCCCTGCTCTGTAGCAGACCATCTCTCCCTCCACTCTGGCC
TCATCTCCAGCAGATCATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_j08.b1 MSMg01no268_j08.b1 CHROMAT_FILE:
MSMg01no268_j08.b1 PHD_FILE: MSMg01no268_j08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:06:53 2005
         (124 letters)



>mm_chr2_126386487_126387010
          Length = 524

 Score =  232 bits (120), Expect = 5e-66
 Identities = 123/124 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttcagcgatatgcactgaaactgtttgggttttgcctaatgcacgtttctgtgatgtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttcagcgatatgcactgaaactgtttgggttttgcctaatgcacgtttctgtgatgtct 260

                                                                       
Query: 61  tctacgaaccatcagctgagttcaggaaaccatcaggactcaactttaattctttcagat 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctacgaaccatcagctgagctcaggaaaccatcaggactcaactttaattctttcagat 320

               
Query: 121 attg 124
           ||||
Sbjct: 321 attg 324


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 124
Length of database: 524
Length adjustment: 8
Effective length of query: 116
Effective length of database: 516
Effective search space:    59856
Effective search space used:    59856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)