BAC Information

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BAC

Clone NameMSMg01-268N23
Chromosome2 (Build37)
Map Location 86,115,544 - 86,115,836
singlet/doubletsinglet
Overlap geneOlfr1051
Upstream geneOlfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1
Downstream geneGA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268N23.T7 (MSMg01no268_n23.b1)MSMg01-268N23.TJ (MSMg01no268_n23.g1)
ACCAG409158AG409159
length742738
length of high quality
(start - end)		327 (389 - 715)301 (438 - 738)
definitionCHROMAT_FILE: MSMg01no268_n23.b1 PHD_FILE: MSMg01no268_n23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:14 2005CHROMAT_FILE: MSMg01no268_n23.g1 PHD_FILE: MSMg01no268_n23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:14 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTGTTTAGCTCTGTAGCCCATTTTTTAATTGGGTTATTTGGTTT
TCTGGAGTCTACCTTCTTGAGTTCTCCATATATTGTGTATATTAGTCCTC
TGTCAGATGTAGAATTAGTAAAGATATTTTCCCAATCTGTATACTGCCAT
TTTCTCCTATTGACAGCAGTGTCCTTTGCTTTATTGAAGCTTTTCAGTTT
CAGGAGGGCCTAGGAGGACTGAAATGGTAATCGCAGTTAGGGCCTCTTTT
CGCTGGCAGACCAACGAAGAGGACGAATTAGTGGATTGATCCCACAAATG
AAAAAAAAAAAATTCCCTTCNTAATGACCCCCCCCCCCTAGAGGAACCAA
TTGCACAAGAATGCAAAAATCAGATTTTTCTTCAAAAAAGGCACTGGCTG
AGAGGCAGGGGGTGAGGCTATCAAGACAAACCCACCAAGTTTCATTTGGA
GGAACTAAATATTGGCTACTAATATCAGGTGCAAGGGCAGTATTACTAAG
ATGGGCATACTATGAAGGGGGTGTATTAGAAGTCACACAGAGACCCAACC
CTGAGACCTGATAGAGAGATAAACCATTCCACTTTTCGGGTTGCCAGCAG
TAATGGTGGGGATTATTTGTTGCGGTAAAATGGCCAGGAACAGCAATGCC
TTCATAAAAAGGTGGTTGGGAATGGTAACACAGCCAGCAATC

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATATCTCTACAGTATCTTCCAGGCTC
TGCTGTTCCCTATTAGGTATTTCCCATTAAGCTTCTGTGGTGCTAATGTT
ATAAGCCATTTCTATTGTGATGTTGTCCCCTTACTACCTTTGATCTGTTC
ACATGTAGAGGAGACAGAATTATTGACTATACTGTTTTCAGCCTTCAATT
TAATCTCTTCTCTTCTTGTTGTTCTTTTGTCTTACATGCTAATTTTGTTA
ACCATATTTCGAATGCGTTCTGCTTAAGGTAGGAAAAAAGCTTTCTCCAC
TTGTGGTTCCCTNCTTACTTTGGCCCCCCCCCCCTACGGTTCTCTACTCT
TCATGTATGTTCAGCCTAAATCTGCTCACTCAAATAAATATGACAAAGCA
GCATCTGTGTTTTATACTTTAGTGATCCCCATGCTTAACCCCTTGATTTA
TAGTTTAAGGAACAAAGAGGTAAAAAATGCCTTTCATAGAGTATTTAAGA
ATCTATGAAGACTGCATTATTCAGTATTAAGTAATAATATGTGACAATTG
TAACTGCCATATGATGATATTTCCAAAATAGTTGCATTTAACTCCGCAAA
ATTTTATTATAGTTTAAATTGAGATATTGTTTCACAATTTTACTCAATTC
CTCCCTTATAATAGAAATATTAATTTAATCTTGCATTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_n23.g1 MSMg01no268_n23.g1 CHROMAT_FILE:
MSMg01no268_n23.g1 PHD_FILE: MSMg01no268_n23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:14 2005
         (301 letters)



>mm_chr2_86115344_86116038
          Length = 695

 Score =  532 bits (275), Expect = e-155
 Identities = 291/299 (97%), Gaps = 6/299 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   atatgacaaagcagcatctgtgttttatactttagtgatccccatgcttaaccccttgat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 atatgacaaagcagcatctgtgttttatactttagtgatccccatgcttaaccccttgat 434

                                                                       
Query: 61  ttatagtttaaggaacaaagaggtaaaaaatgcctttcatagagtatttaagaatctatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ttatagtttaaggaacaaagaggtaaaaaatgcctttcatagagtatttaagaatctatg 374

                                                                       
Query: 121 aagactgcattattcagtattaagtaataatatgtgacaattgtaactgccatatgatga 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||
Sbjct: 373 aagactgcattattcagtattaagtaataatatgtgacaattgtaactgccat---atga 317

                                                                       
Query: 181 tatttccaaaatagttgcatttaactccgcaaaattttattatagtttaaattgagatat 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 316 tatttccaaaatagttgcatttaactccacaaaattttattatagtttaaattgagatat 257

                                                                      
Query: 241 tgtttcacaattttactcaattcctcccttataatagaaatattaatttaatcttgcat 299
           ||||| ||||||||||||||||||||||||   ||||||||||||||||||||||||||
Sbjct: 256 tgttttacaattttactcaattcctccctt---atagaaatattaatttaatcttgcat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 695
Length adjustment: 9
Effective length of query: 292
Effective length of database: 686
Effective search space:   200312
Effective search space used:   200312
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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