BAC Information

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BAC

Clone NameMSMg01-268O07
Chromosome2 (Build37)
Map Location 94,761,977 - 94,762,259
singlet/doubletsinglet
Overlap genenone
Upstream geneGm1335, LOC620695, Alkbh3, Hsd17b12, E530001K10Rik, Ttc17, Itpa-ps1, Api5, LOC100043259
Downstream geneLOC100042843
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-268O07.T7 (MSMg01no268_o07.b1)MSMg01-268O07.TJ (MSMg01no268_o07.g1)
ACCAG409174AG409175
length710716
length of high quality
(start - end)		319 (45 - 363)283 (76 - 358)
definitionCHROMAT_FILE: MSMg01no268_o07.b1 PHD_FILE: MSMg01no268_o07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:15 2005CHROMAT_FILE: MSMg01no268_o07.g1 PHD_FILE: MSMg01no268_o07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:07:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTGATCTTTCCAAAACTTTTATCATGAATGGGTGTTGAATCTTGTC
AAATGCTTTTTTTGCATCTAACGAGATGATCATGTGGTTTTTGTCTTTGA
GTTTGTTTATATAATGGGTTACATTGATGGATTTTCGTATATTAAACCAT
CCCTGCATTTCTGGAATAAAACCTACTTGGTCAGGATGTATTATTGCTTT
AATATGTTCTTGGATTCGGTTAGCAAGAATTTTATTGAGGATTTTTGCAT
CGATATTCATAAGAGAAATTGGTCTGAAGTTCTCTATCTTTGTTGAGTCT
TTCTGTATTTTTTTATCACCACCCCCCCACCTTCATAAAATGAGTTGGGT
AGAGTACATTCTACTTCTATTTTGAGAAATAGTTTGTGCAGAACTAGAAT
TAGATCTTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCTGTCTGGTC
CTGGGCTTTTTTTGGCTGGGAGACTATTAATAACTGCTTCTATTTCTTTA
TGTGATATGGGACTGTTTAGATGGTCAACTTGATCCTGACTCAACTTTGG
TACCTGGTATCTGTCCAGAAATTTGTCCATTTCGTCCAGGTTTTCCAGTT
TTGTTGAGTATAATCTTTCGTAGAAAGATCTGATGGTGTTTTGGATTTCT
TCAGGATCTG

TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGGTCCACCAGACCAGAGGCTGGGT
CCTCCTTCTTCAATCCTTAATTATGAAGATACTCTACAGTTGAGATATAT
ATGTAAAAGGATGCACATATGTTCTGCTGGTTTCTTGTCCACAGACAATG
ATTTCCTATTATCCTCACTTCCCTCCTTCTTGCTGTTTATACGATACCCT
CCTGCAAAGGTGAACCAGGCTACTTTTACTTAATTTTAAAAACTGATCCT
AGAACAGTGTGTATCACATAATAAATACACACTAAAAATATGTTAGCTGT
GTGAGGGATTTTTTTTTTAACCGCCCCCCCCCTTGATTCATGCCATAGTT
TGAGTCAGACCTGGGGCATCTGTTCACAGATCTCACCCACATTATTAACA
ACACCACATCTGCCTCCTTTAAAAAGCTTTCTGATTCTCTAACAGTTTCA
CTTGAGCCGACATTGGGGCTACCTCCGTGCCATGGTTTGTTTTATGAAAT
CCTGGAAATCCTCACATGAAAAAGAGTTGCAATTGTCAAACCCTCATCTG
AAATCTACTGAAGAAAAGAATGAAAACAGTGCCTAGGGGAAACCAGGAGT
ACAGATGCAAATACCTATGCCACCTATGTACCAGATGCCATTGAAGAACG
GAATCATATTACAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no268_o07.g1 MSMg01no268_o07.g1 CHROMAT_FILE:
MSMg01no268_o07.g1 PHD_FILE: MSMg01no268_o07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:07:15 2005
         (283 letters)



>mm_chr2_94761777_94762459
          Length = 683

 Score =  524 bits (271), Expect = e-153
 Identities = 280/283 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggtccaccagaccagaggctgggtcctccttcttcaatccttaattatgaagatactct 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 483 aggtccaccagaccagaggctgggtcctccttcctcaatccttaattatgaagatactct 424

                                                                       
Query: 61  acagttgagatatatatgtaaaaggatgcacatatgttctgctggtttcttgtccacaga 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 423 acagttgagatatatatgtaaaaggatgcacatatgttctgctggtttcttgcccacaga 364

                                                                       
Query: 121 caatgatttcctattatcctcacttccctccttcttgctgtttatacgataccctcctgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 caatgatttcctattatcctcacttccctccttcttgctgtttatacgataccctcctgc 304

                                                                       
Query: 181 aaaggtgaaccaggctacttttacttaattttaaaaactgatcctagaacagtgtgtatc 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 aaaggtgaaccaggctagttttacttaattttaaaaactgatcctagaacagtgtgtatc 244

                                                      
Query: 241 acataataaatacacactaaaaatatgttagctgtgtgaggga 283
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 acataataaatacacactaaaaatatgttagctgtgtgaggga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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