BAC Information

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BAC

Clone NameMSMg01-269J18
Chromosome2 (Build37)
Map Location 87,388,196 - 87,388,589
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038
Downstream geneLOC668445, LOC668447, Olfr1129, Olfr1130, Olfr1131, Olfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-269J18.T7 (MSMg01no269_j18.b1)MSMg01-269J18.TJ (MSMg01no269_j18.g1)
ACCAG409680AG409681
length708715
length of high quality
(start - end)		631 (47 - 677)328 (388 - 715)
definitionCHROMAT_FILE: MSMg01no269_j18.b1 PHD_FILE: MSMg01no269_j18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:06 2005CHROMAT_FILE: MSMg01no269_j18.g1 PHD_FILE: MSMg01no269_j18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCTGAGTTATGAGCCTGTCAGCCTGCCCCTGAGTGCACAAGATT
TTGTCTCTTAGGAATAAGAGGAAGTTAAAATAACAGGATTAAGGTTGAGA
TTTCAAACAATCAACATGATTGAAGAGCATTCCTATTATCAATCTTTAAA
CATTTTTATGTAGGTAATTCCCAAACTTAGCATTAGCAAATTGACTTCAA
TTAATTTGGTACTCATTACTTTGTGATCATCACTCATAATATATATTTTA
ATGTTATAAAATAGGGAACTATTACATATCCATACACCTGTACAGATTTA
TGTTAACCCCAAAAATACAACAAACCATGCATTCATATTTACTTAGTGGA
TACAGGAAACTTCATTACCTCATTGCCTAAAGATATTTATATATGGTTCT
TGTATTTTATGGCTAATATTGATATATAACTGAGTACACACTGTGCATGC
CCCTTTGGCACTGGGTTACCTCACTCAGGATGATATTTTCAAGTTCCATT
CATTTGCCTGGAACATTCATGGTATCTTGGTTTTATACAAATTTTATCTT
GGTTTTATACAAATAAAAGTGCTATGAAAATAATCAAGCAATTGTCTTTG
TGAGATGTTGGAGCATCTTTGGGTATATGCCTAAGAGTGGTATATCTAGG
TCTGCAGA

ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGAACTTTTCAGCTGGGGAACGA
GAGTACCAGTGAGTACAGCTTTACCAGGTAAGTCTGGTCTTGAACTTTCT
AAGGAAATTCAAGACAGTCTATCAGAAGTAAAGTGGAATATGTTTGGCCT
TGAATTTTTTCTGGTGTTAGGAGCCCTTTTGTTCCTTTTCACATGTTATC
AAGTGATTAAGATAGGGCTGAAAATTCTAGAGGAAATTCAGGACAAGCTA
TCAGAAGTAAAGCGGGGAGAGAGAGTAGGAACAAAGAGGAAATATGGTAC
ACAAAATAAGTATATTGGCTTTTCCCCCGCCCCCTGAACCCGAGGAAAAG
TTAAGGTTAGGTAGGAATACCTGGAGAGAGATTAGAAGAAAAAGAGGANN
AAGGGAAAAGAAGAAAGATCGATTAGCGGAGGTCTCTAGGAGATACTCGT
CACTAGATGAGCTCAGGAAGCCAGCTCTTAGTAGCTCTGAAGCAGATGAA
GAATTCTCCTCTGAGGAAACAGACTGGGAGGAAGAAGCAGCTCATTATGA
GAAAAAAGGGTACCAGCCAGGTAAAGTGCTAGCTAATCAGTTAAGGAAGC
CAAAAGCGGCTGGCGAAGGCCAGTTTGCTGATTGGCCTCAGGGCAGTCGG
CTTCAAGGTCCGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no269_j18.b1 MSMg01no269_j18.b1 CHROMAT_FILE:
MSMg01no269_j18.b1 PHD_FILE: MSMg01no269_j18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:06 2005
         (631 letters)



>mm_chr2_87387993_87389023
          Length = 1031

 Score =  716 bits (370), Expect = 0.0
 Identities = 388/394 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctctgagttatgagcctgtcagcctgcccctgagtgcacaagattttgtctctt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctgagttatgagcctgtcagcctgcccctgagtgcacaagattttgtctctt 263

                                                                       
Query: 64  aggaataagaggaagttaaaataacaggattaaggttgagatttcaaacaatcaacatga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aggaataagaggaagttaaaataacaggattaaggttgagatttcaaacaatcaacatga 323

                                                                       
Query: 124 ttgaagagcattcctattatcaatctttaaacatttttatgtaggtaattcccaaactta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttgaagagcattcctattatcaatctttaaacatttttatgtaggtaattcccaaactta 383

                                                                       
Query: 184 gcattagcaaattgacttcaattaatttggtactcattactttgtgatcatcactcataa 243
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 384 gcattagcaaattgacttcaattaatttggtactcattactttttgatcatcactcataa 443

                                                                       
Query: 244 tatatattttaatgttataaaatagggaactattacatatccatacacctgtacagattt 303
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 444 tatatattttaatgttataaaatagggaactattatatatccatacacctgtacagattt 503

                                                                       
Query: 304 atgttaaccccaaaaatacaacaaaccatgcattcatatttacttagtggatacaggaaa 363
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 atgttaacccccaaaatacaacaaaccatgcattcatatttacttagtggatacaggaaa 563

                                             
Query: 364 cttcattacctcattgcctaaagatatttatata 397
            ||||||| |||||||||||||||||| ||||||
Sbjct: 564 tttcattagctcattgcctaaagatatatatata 597


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space:   634041
Effective search space used:   634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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