BAC Information

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BAC

Clone NameMSMg01-269K22
Chromosome2 (Build37)
Map Location 164,364,251 - 164,364,545
singlet/doubletsinglet
Overlap genenone
Upstream geneHnf4a, 5830472M02Rik, Serinc3, Pkig, Ada, Wisp2, Kcnk15, Rims4, Ywhab, LOC381404, Tomm34, Stk4, Kcns1, Wfdc5, Wfdc12, Wfdc15a, Wfdc15b, Svs2, Svs3b, Svs4, Svs3a, Svs6, Svs5, Slpi, Matn4, Rbpjl, Sdc4, 2610042O14Rik, 1700126L10Rik, Dbndd2, Pigt
Downstream geneLOC670507, Wfdc2, OTTMUSG00000016288, Wfdc6a, Spinlw1, Wfdc8, Wfdc6b, Wfdc16, OTTMUSG00000001088, Wfdc10, LOC629761, Wfdc13, Spint4, OTTMUSG00000016293, Wfdc3, Dnttip1, Ube2c, Tnnc2, Snx21, Acot8, Zswim3, Zswim1, 1700020C07Rik, Neurl2, Ctsa, Pltp, F730014I05Rik, Zfp335, LOC629777, Mmp9, Slc12a5, Ncoa5, Cd40, Cdh22, Slc35c2, Elmo2, Gm1008, Zfp334, 4833422F24Rik, Slc13a3, 2810408M09Rik, Slc2a10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-269K22.T7 (MSMg01no269_k22.b1)MSMg01-269K22.TJ (MSMg01no269_k22.g1)
ACCAG409734AG409735
length738737
length of high quality
(start - end)
---295 (439 - 733)
definitionCHROMAT_FILE: MSMg01no269_k22.b1 PHD_FILE: MSMg01no269_k22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:11 2005CHROMAT_FILE: MSMg01no269_k22.g1 PHD_FILE: MSMg01no269_k22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTACATCATCCGCGAAGTTC
TCATCTTTCTCCTACCGCTATGTAACACGAAGCTCACGTACCCATCCTTC
CCCTACTGATCCCTATTTCCCCATCGCATCCCCTCTGAGAATCAGTAATC
GAGCCGCTGATAACTTCATGAACGCGATTAGATAATTGCTCTXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXACTACGCGATATCGATTCCGAATACCGAAACTCG
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGTAACCCATGATAGAAGTGTGGAGTCAGC
AGAAAGAAGGCCTCTTTTCACCCGTTGAGGTTCAAGCAAATGGTCCCGAA
TAGATCCAGCCGTCTTCATTTATACAGAATTTCAGAGCATTCAAACATAT
GCCATTTCAAATTTTCCTTTAATCATTATCCAAGAATATCCACAAGTACT
TATTAAACTTCATTTTAAGTTCCCTTATTTCTCTGACGTCAGTGATTAAC
CTTTACCCATATCTAAGCAGTATAGTGTTACAATCCAAACGATTATGTCA
TATCTAAGCATATCCTANATTACCACCCACCCCGATTTAAATATTGTATT
GCAAGCCAAATTATTATATCTAGTCAGGAACATCTAAGTTTACACAGGCC
GGCAGCACACATGCAGCTTCAAAATAAAAGACAATCCGAATCCATGCATA
AACTTTTATCAGAAATATAACCTTGGTATTTTATCACCATCTGATTCAAT
ATGCTCACAGTATGTTTTAAGTTGTCTTCAGGCCATTTTCTGTTTTAGTT
TTACAGTATGGTTCTGCTCTATACAGCTTTTCCATAAAGAGTAGAAGCTA
ACAATTAGCATTTTCTATCAACACACCATTTCTTTTTTTGGGTAAGCCCT
CATCTAAAAGCAAAAACGAGTCTATTCAGCTTATATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no269_k22.g1 MSMg01no269_k22.g1 CHROMAT_FILE:
MSMg01no269_k22.g1 PHD_FILE: MSMg01no269_k22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:12 2005
         (295 letters)



>mm_chr2_164364051_164364745
          Length = 695

 Score =  547 bits (283), Expect = e-160
 Identities = 292/295 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttacacaggccggcagcacacatgcagcttcaaaataaaagacaatccgaatccatgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tttacacaggccggcagcacacatgcagcttcaaaataaaagacaatccgaatccatgca 436

                                                                       
Query: 61  taaacttttatcagaaatataaccttggtattttatcaccatctgattcaatatgctcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 taaacttttatcagaaatataaccttggtattttatcaccatctgattcaatatgctcac 376

                                                                       
Query: 121 agtatgttttaagttgtcttcaggccattttctgttttagttttacagtatggttctgct 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 375 agtatgttttaagttgtcttcaggccattttctgttttagttttacagtatggtcctgct 316

                                                                       
Query: 181 ctatacagcttttccataaagagtagaagctaacaattagcattttctatcaacacacca 240
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 315 ctatacagcttttccataaagaatagaagctaacaattagcattttctatcaacacacca 256

                                                                  
Query: 241 tttctttttttgggtaagccctcatctaaaagcaaaaacgagtctattcagctta 295
           |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 255 tttctttttttgggtaagccctcatctaaaagcaaaaacgagtctattcaactta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space:   196196
Effective search space used:   196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)