BAC Information

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BAC

Clone NameMSMg01-269L18
Chromosome2 (Build37)
Map Location 174,156,119 - 174,258,506
singlet/doubletdoublet
Overlap geneGnas, Th1l, Ctsz
Upstream gene1700021F07Rik, 1700030G11Rik, LOC100043911, Rab22a, 1700010B08Rik, Vapb, LOC620189, LOC664880, LOC100043912, LOC664901, Stx16, Npepl1, Nespas
Downstream geneRpl30-ps5, Tubb1, Atp5e, Slmo2, LOC664967, LOC100043757, Edn3, LOC545487, LOC100043760, LOC100043761, LOC620790, LOC665001, LOC100043762, LOC100043763, LOC100043764, LOC100043914, LOC100043915
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-269L18.T7 (MSMg01no269_l18.b1)MSMg01-269L18.TJ (MSMg01no269_l18.g1)
ACCAG409770AG409771
length734745
length of high quality
(start - end)		316 (41 - 356)289 (70 - 358)
definitionCHROMAT_FILE: MSMg01no269_l18.b1 PHD_FILE: MSMg01no269_l18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:15 2005CHROMAT_FILE: MSMg01no269_l18.g1 PHD_FILE: MSMg01no269_l18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(174,258,195 - 174,258,506)(174,156,119 - 174,156,407)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCTGCTGTAATTGGGTGTCCTTTGTTCTGGATGAGCAAACCCAGCAGGGA
CCAGAGATCCCACCAGGGGGACAGACACAGGGTGGAGGGAAGGCAATGGA
CTGCTTTATGGAATAACCCAGGGGCCTTATCCCTTTTCCTTCATTCCCAA
ACTGGCGAGTGACATCCAGCTGAGGTTAGGTCCCTTTGACCTTCACTGGT
GGTTAGGGTCATCAGGACCACTGACCAGTTTCCTCTTCCCAGAGCCACTA
TGTTCCTGGTGCAACTCACGCTGGGACTGGTGCCTGGGGGGTGGGGATGA
CTAATTATAGTTGNGATCCCANCCTTACCCCCTTTACTGACCCAGGGAAG
GATCTAAATACACGATTCGAAAAACAAAAACAACTCGGTGTCGTCCTTAG
TCTCTTTCCACCTTGCTCTCTCTCTGAGCCTAAAGTGCATCCAGTTTGCT
AGCCTGGCTGGCAAGCAGACTTCAGAGACCCACTAGTCTTCACCACCCGG
GGCTGGGACCACAGACAGGTGGCATCATGCTGACTTTCTGTGGGTGCTAA
GGATCTGAACGCTGGTCCTGCAACAGCTCTTTACTACCTGACTGGGTTCC
CCAGCCTGTAAACCTGATTCCTTTCCTCCACAGTTTTTAATTTTAAATTA
CAAATACTATCTCATTAATTATCTATGGGGCGGG

CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXGCCGGGCGGGGGCTGCAAATTGGGCGTGGGA
CCCCCTCGTTCGGTCTCGTCCCCTCAGTTGGCCACACTCCCCCCCGTCCC
TGGCTTCGCGTCCTCGCGAGGCCTACTTAGTGCCAGGGGCCAGGGTGCGT
GTCGGGAGGGGGAGGGGAGGCTCACAGGGCCCCTCGGACTGCGACAGAGT
AGGGCTAGGGACAGGAAACGGGCCGGCGGGCCCAGGGAGGGGGACCCGCC
TCACTGGGGTGTGCGATTTGTTGGGAGGGGGCCCAAAGAGAGGCCAAGGC
CACTAGGGTATACTCTGGCGAGCCAAGTAGCCGCCGGGGTGGGGGGGCGG
GTGACATCAGCCCCTCGGAAAGGACGGAGCGATAAAGGTGGTGCAGAGGG
GGCAAGGCGCGCGANAAAGTCGTGGCGCCGAAGTGGCCTATTTTTGTGAG
GTAAGGGCGTGATAATAATCGGTTCCTTACACGTCGGGAGTCACTTTTCA
CCGAATGAGTGTGGGAACCGCTAACTTGTCATGTTTCTAAACACGTTCTG
GTATGTATACGCTAATGAACAAAACAACCCTGATTCATGCTTTCAATATT
ATTGATAAAGGAATAGTATTGATATTTCCCAATGTCACGCGTCGCACCCA
TTCCTTTTTATATGGGACCATTTCGCCCCCCTGTTTTTTGCTAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no269_l18.b1 MSMg01no269_l18.b1 CHROMAT_FILE:
MSMg01no269_l18.b1 PHD_FILE: MSMg01no269_l18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:15 2005
         (316 letters)



>mm_chr2_174257991_174258706
          Length = 716

 Score =  603 bits (312), Expect = e-177
 Identities = 312/312 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctgctgtaattgggtgtcctttgttctggatgagcaaacccagcagggaccag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 gaattctctgctgtaattgggtgtcctttgttctggatgagcaaacccagcagggaccag 457

                                                                       
Query: 65  agatcccaccagggggacagacacagggtggagggaaggcaatggactgctttatggaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 agatcccaccagggggacagacacagggtggagggaaggcaatggactgctttatggaat 397

                                                                       
Query: 125 aacccaggggccttatcccttttccttcattcccaaactggcgagtgacatccagctgag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 aacccaggggccttatcccttttccttcattcccaaactggcgagtgacatccagctgag 337

                                                                       
Query: 185 gttaggtccctttgaccttcactggtggttagggtcatcaggaccactgaccagtttcct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gttaggtccctttgaccttcactggtggttagggtcatcaggaccactgaccagtttcct 277

                                                                       
Query: 245 cttcccagagccactatgttcctggtgcaactcacgctgggactggtgcctggggggtgg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 cttcccagagccactatgttcctggtgcaactcacgctgggactggtgcctggggggtgg 217

                       
Query: 305 ggatgactaatt 316
           ||||||||||||
Sbjct: 216 ggatgactaatt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no269_l18.g1 MSMg01no269_l18.g1 CHROMAT_FILE:
MSMg01no269_l18.g1 PHD_FILE: MSMg01no269_l18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:15 2005
         (289 letters)



>mm_chr2_174155919_174156607
          Length = 689

 Score =  559 bits (289), Expect = e-164
 Identities = 289/289 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gccgggcgggggctgcaaattgggcgtgggaccccctcgttcggtctcgtcccctcagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gccgggcgggggctgcaaattgggcgtgggaccccctcgttcggtctcgtcccctcagtt 260

                                                                       
Query: 61  ggccacactcccccccgtccctggcttcgcgtcctcgcgaggcctacttagtgccagggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggccacactcccccccgtccctggcttcgcgtcctcgcgaggcctacttagtgccagggg 320

                                                                       
Query: 121 ccagggtgcgtgtcgggagggggaggggaggctcacagggcccctcggactgcgacagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccagggtgcgtgtcgggagggggaggggaggctcacagggcccctcggactgcgacagag 380

                                                                       
Query: 181 tagggctagggacaggaaacgggccggcgggcccagggagggggacccgcctcactgggg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagggctagggacaggaaacgggccggcgggcccagggagggggacccgcctcactgggg 440

                                                            
Query: 241 tgtgcgatttgttgggagggggcccaaagagaggccaaggccactaggg 289
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtgcgatttgttgggagggggcccaaagagaggccaaggccactaggg 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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