BAC Information

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BAC

Clone NameMSMg01-270A06
Chromosome2 (Build37)
Map Location 137,027,724 - 137,027,873
singlet/doubletsinglet
Overlap genenone
Upstream genePak7, LOC668910, LOC100043492, BC034902, Ankrd5, Snap25, LOC668911, Mkks, 2210009G21Rik, Jag1
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-270A06.T7 (MSMg01no270_a06.b1)MSMg01-270A06.TJ (MSMg01no270_a06.g1)
ACCAG409972AG409973
length724743
length of high quality
(start - end)
---148 (539 - 686)
definitionCHROMAT_FILE: MSMg01no270_a06.b1 PHD_FILE: MSMg01no270_a06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:35 2005CHROMAT_FILE: MSMg01no270_a06.g1 PHD_FILE: MSMg01no270_a06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAATGCCCTTCATGACACATGATGGTAGCTTCTACTACATGACAACCTA
CGTTTTCAAAGTCCCCTGGTAAGATGCTGGTAGCACTCCCACTGGGATGC
GGAACCAGACACGGCTGACCACTTTCACCCTGACCTCTGAAACTCATGAC
ATGAAGAAATACCCGAATGATCTCTGCTCCGTTCCGTTCTAGGGGAAATA
CACTGTGGTCACTGAGCACTGCCAGCTCCACTCTGCTGTATATGACATGC
TCTAGTATTATTAGTGATGCCTAACACTCTGCAAGAGAACCCCGAACCCT
GACAATATTCTACTGTTATTTACTTGCCACCCACCACTCAGTTGATTGGG
CTCAGGACTATGTCGATCTATCTTTGTCTCCAGTGAGAAGGATATCTCTG
ATGATACACCCTTCACGGTAGCCGCAAACCGTATGTAATATCTTGTCTGT
AGCGCTGGCCAGGAGAGCGTCATGATATGCTCGATCGATGACTCCAATCA
CTGAATATAGACTGAACGATGATCCCAAAAGATGGCTTGACCGCCCTTGC
TCATGGATCGTGTGGATCTTGATTGGACTAATGGCTATCCTCGCGAAAGT
TTCCTTGATATTCATTGCAGACTGCTTCTAAATCGCCAAGCAAATCCTCT
TTGAATTATGAGGAGCAATTTGGG
ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTTGCTCATTGCCCAGTAATGCTTTA
TTCTTTTGCATATGTGTCGCTCTGCTTCCTGATAATGCATTGGCTCTTGT
TTCTCCTGAGATATACTGTTAGTGACGGACTAATACGTTAGCCTTAGTTG
ATATGCCCCTATCTAGATGTTACACAGGGACCCCAATGGAGGATCTAGAA
AATGTACCCGCGGAGATAAAATGGTTTTGCAGCCCGCTTTGCCTACCGCT
ACCTCCTCTCTCCCTGACCTTCTTCACTTCCTCTCTTGACTACACTCTCT
CCGCTCCTTGATCTATGTCGCTCACTTCCTTTTCTCTCTGTCTCTCCCTC
CTACCCTTCCTTACTTCCTCGTGACCGTGATACCATCTCCCTGCCACTTT
TCACGATCCCTGTTCCTGCGTTCCCTACTGCTCCTCCCTTTCTTTGTAAG
AACACCTGTTGACAAACTAGTTGACCACTCTTGGATATTCTCTGCCCCTG
AGTTATATATACCTTTACTTGCTGGATGTGTTCCTAATGGCTTTCAGTCC
TCCCAAAGCTATCTCGACCCCAGTTCTTCCCTCACTGCACTCTGGCTCCT
CTCCTCCAGTAGATGTGTCTTGGGACAAATTGAGCCCCAAATGTCCCCTC
ACCTGAGTGACTCCACCCACTGTTGTCTCCCACTCCAGCTCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no270_a06.g1 MSMg01no270_a06.g1 CHROMAT_FILE:
MSMg01no270_a06.g1 PHD_FILE: MSMg01no270_a06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:35 2005
         (148 letters)



>mm_chr2_137027524_137028073
          Length = 550

 Score =  271 bits (140), Expect = 2e-77
 Identities = 147/150 (98%), Gaps = 2/150 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctctgcccctgagttatatatacctttacttgctggatgtgttcctaatggctttcagt 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctctgcccctgagctatatatacctttacttgctggatgtgttcctaatggctttcagt 260

                                                                       
Query: 61  cctcccaaagctatctcgaccccagttcttccctcact--gcactctggctcctctcctc 118
           ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 261 cctcccaaagctatctcgaccccagttcttccctcactctgcactctggctcctctcctc 320

                                         
Query: 119 cagtagatgtgtcttgggacaaattgagcc 148
           ||||||||||||||||||||||||||||||
Sbjct: 321 cagtagatgtgtcttgggacaaattgagcc 350


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 148
Length of database: 550
Length adjustment: 8
Effective length of query: 140
Effective length of database: 542
Effective search space:    75880
Effective search space used:    75880
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)