Query= MSMg01no270_a22.b1 MSMg01no270_a22.b1 CHROMAT_FILE:
MSMg01no270_a22.b1 PHD_FILE: MSMg01no270_a22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:38 2005
(323 letters)
>mm_chr2_95556630_95557352
Length = 723
Score = 609 bits (315), Expect = e-179
Identities = 318/319 (99%)
Strand = Plus / Minus
Query: 5 gaattcatttactgcccattgaatgttccaaaataaacatttgcaatgaagataaaacct 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 gaattcatttactgcccattgaatgttccaaaataaacatttgcaatgaagataaaacct 464
Query: 65 gatatttcctatttaagaccaactgcaaggttactaggctttttatttgaacaaagctaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 gatatttcctatttaagaccaactgcaaggttactaggctttttatttgaacaaagctaa 404
Query: 125 gtggaaagaatctacaaggtacagatcattctgaataaaatcctgggtctccaggcaatt 184
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 403 gtggaaagaatctacaaggtacagatcattccgaataaaatcctgggtctccaggcaatt 344
Query: 185 gggaaacacttggataagcaggacaaggttgctattattacattcgctatacatccactt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 gggaaacacttggataagcaggacaaggttgctattattacattcgctatacatccactt 284
Query: 245 catggtgatatggtgattatatgatagtcagaatgccttttattctcttctttataaagc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 catggtgatatggtgattatatgatagtcagaatgccttttattctcttctttataaagc 224
Query: 305 aaaaaatgctaacttttga 323
|||||||||||||||||||
Sbjct: 223 aaaaaatgctaacttttga 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space: 224196
Effective search space used: 224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no270_a22.g1 MSMg01no270_a22.g1 CHROMAT_FILE:
MSMg01no270_a22.g1 PHD_FILE: MSMg01no270_a22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:38 2005
(641 letters)
>mm_chr2_95374312_95375351
Length = 1040
Score = 1216 bits (629), Expect = 0.0
Identities = 638/641 (99%), Gaps = 1/641 (0%)
Strand = Plus / Plus
Query: 1 cagtgtctatacagcctatattgtctttttgctgtttttaaatcatacgactctcccatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtgtctatacagcctatattgtctttttgctgtttttaaatcatacgactctcccatg 260
Query: 61 acaggaatgaattgttttgctttccataatcagcagtcatgaaagctgaagacagcgaca 120
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaggaatggattgttttgctttccataatcagcagtcatgaaagctgaagacagcgaca 320
Query: 121 cccaggtcaaactttctcttatacatgctctagcgttaaggccctgtaatgattgttaca 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 cccaggtcaaactttctcttatacatgctctagcgt-aaggccctgtaatgattgttaca 379
Query: 181 atggacatattttcaattgtctttatcaataatctttgatgacttttatgtttgtgagag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 atggacatattttcaattgtctttatcaataatctttgatgacttttatgtttgtgagag 439
Query: 241 tcaatcaggtacatttctggtttcttctttcagatccaatgaattacatggcagttgata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tcaatcaggtacatttctggtttcttctttcagatccaatgaattacatggcagttgata 499
Query: 301 aatgtaataccactgccatagttatgactaacttatgtaacataatgggctataaaatca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aatgtaataccactgccatagttatgactaacttatgtaacataatgggctataaaatca 559
Query: 361 gaagtcaattctcctggtttaaacatgttagaatttacattatattcccattatgagagg 420
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 560 gaagtcaattctcctggtttaaacatgtcagaatttacattatattcccattatgagagg 619
Query: 421 gaggttaattgagttctttggaggaagggatgaaagtgtctgatgatttcataaagcatc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gaggttaattgagttctttggaggaagggatgaaagtgtctgatgatttcataaagcatc 679
Query: 481 tctcatgacctaaacataggaattagaattagtgctatagatgtttgtgacaagaacaga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tctcatgacctaaacataggaattagaattagtgctatagatgtttgtgacaagaacaga 739
Query: 541 agacaaatgacaagaggaaataagacaaaagaatgaaaaagtagaagtagaagaagtttg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 agacaaatgacaagaggaaataagacaaaagaatgaaaaagtagaagtagaagaagtttg 799
Query: 601 atttgggagttgggtattccggtagtggtttctataatata 641
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 atttgggagttgggtattccggtagtggtttctataatata 840
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1040
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1030
Effective search space: 649930
Effective search space used: 649930
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
