BAC Information

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BAC

Clone NameMSMg01-270A23
Chromosome2 (Build37)
Map Location 28,978,498 - 28,979,190
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfm1, Gm347, 1700007K13Rik, Mrps2, LOC665412, Gbgt1, Ralgds, Cel, Gtf3c5, Gfi1b, Tsc1, 1700026L06Rik, 1190002A17Rik, LOC665643, Gtf3c4, Ddx31, Barhl1, LOC100033452, 1700101E01Rik, LOC100039666, Ttf1
Downstream geneSetx, Ntng2, Crsp8, Rapgef1, LOC433415, OTTMUSG00000012686, Trub2, Coq4, Slc27a4, Urm1, LOC100041002, Ceecam1, Odf2, Gle1l, Spna2, LOC665532, Wdr34, Set, Pkn3, Zdhhc12, Zer1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-270A23.T7 (MSMg01no270_a23.b1)MSMg01-270A23.TJ (MSMg01no270_a23.g1)
ACCAG410004AG410005
length733759
length of high quality
(start - end)		318 (41 - 358)693 (67 - 759)
definitionCHROMAT_FILE: MSMg01no270_a23.b1 PHD_FILE: MSMg01no270_a23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:38 2005CHROMAT_FILE: MSMg01no270_a23.g1 PHD_FILE: MSMg01no270_a23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTCAGCTGAGGCATCGCCTCTGTCAGATCAGCCTGTGGGTGTGTAAGTAA
TGGTATTTTCTTGATTGTTAATTGATATAGGAGAGCCCAGTCCACTGAGG
AACACACTGTGTTTAGGCAGACAGACCAGGTCTGGGTAGTATGGGATAGC
TGAGTGTGAGCCTGGAGCAAGCCAGGAGGGAGCAGTGTTCCTCTCTGATT
CTGCCTCCGGCTCCTGCCTTGAGTTCCTGCTCTGATTTCCCTTAAAAGAA
ATCTTACAGCTAGGCTGTAACTTGTAAGATGAAATAAGTCCTTTACCCCC
CCCCCCCATCTTTTTGTTTTTGCGCCCCGCCGTTTATTACATCAATGGGA
AGCCAACTGGGACAAACAAGTACCTGCATGCTCTGTTGGTGAGGATACAA
AATGGATGGCATGGCTGCTTTGCCGGACAGTTCAGCAGTTCCCCACAAAG
AGAAAGCACAGTTATCATTTGTGCCTGCAATTCCCCGCCCATGAGAAACG
AAGGCTTGAAAACCTTGCACTAGGTGTGTTCACATCCCGAGTGTCCATCA
ACAGCAGAGAGGACAAACAGAACACAGTGTCTACCTGGACGAGAGGATAT
TGAAAGGGGAGTAGAGCGCCAACCACGGTACCGCACAGATAAACTTGAAA
CTCTGTGCTAAAGGAAACAGCCAGTCCCCAAGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXATTCTATAGTCCCTGCTTACCTGGAACTCCTGGT
GATCCTCCTGCCTCCATCTCCTAAGTGCTACTACGACTGAGGGTAAAATC
TAAAATCTAATCATGCAAAGTTAAAAGTTTGTTGGACTTGTTCTATTGTT
TGTAGAAAAAACAAGGGTGGGAAGATTAAAGAAATAGCCAAGAAGCTTGG
ATGGAAGTACACATTTTGTGGGCTGCAGAAAATGTCTTCATTTTAATCCA
CAGAAGTAGCAAAGACCATGTTTATTACTGTTGGTATAAAGGCAAATATA
CTATTACATGGAAAACATCTTTGCTAGTCTATACCTTTTTTTGTTTTGTC
CTGATTTCATAAGTCAAAACATTTTTGTGCACCTTATAATTATTTTGGAG
GGTATCCAGGCCTAAGTTATTCTATAGCAAATCACATGTGTATATATTAT
TTATATTTTATGTTATATAATTCTAAAAATATAATGTAACGTAATACTTA
TTTGTATTTATTATATATTTGCTTTTTATTTCATCTTTACGTGTAGGAGT
GTTTTGCCTGCTTGTATGTGCACCCATTGCCGGCCCCAGAGAAGGGCATC
TGTTCTCATCACTTAGGACCGAAGTTTCAGACAGATGTGAACTGCAATGT
GGCGCTAGAAAATTAACTCTGGGTCCTCTGGAAGATCAGTAAGTGTTCCT
AACTGCTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no270_a23.g1 MSMg01no270_a23.g1 CHROMAT_FILE:
MSMg01no270_a23.g1 PHD_FILE: MSMg01no270_a23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:38 2005
         (693 letters)



>mm_chr2_28978298_28979390
          Length = 1093

 Score = 1309 bits (677), Expect = 0.0
 Identities = 689/693 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctatagtccctgcttacctggaactcctggtgatcctcctgcctccatctcctaagt 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attctatagcccctgcttacctggaactcctggtgatcctcctgcctccatctcctaagt 260

                                                                       
Query: 61  gctactacgactgagggtaaaatctaaaatctaatcatgcaaagttaaaagtttgttgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctactacgactgagggtaaaatctaaaatctaatcatgcaaagttaaaagtttgttgga 320

                                                                       
Query: 121 cttgttctattgtttgtagaaaaaacaagggtgggaagattaaagaaatagccaagaagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttgttctattgtttgtagaaaaaacaagggtgggaagattaaagaaatagccaagaagc 380

                                                                       
Query: 181 ttggatggaagtacacattttgtgggctgcagaaaatgtcttcattttaatccacagaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttggatggaagtacacattttgtgggctgcagaaaatgtcttcattttaatccacagaag 440

                                                                       
Query: 241 tagcaaagaccatgtttattactgttggtataaaggcaaatatactattacatggaaaac 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 tagcaaagaccatgtttattactgttggtataaaggcaaatatactattacaaggaaaac 500

                                                                       
Query: 301 atctttgctagtctatacctttttttgttttgtcctgatttcataagtcaaaacattttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atctttgctagtctatacctttttttgttttgtcctgatttcataagtcaaaacattttt 560

                                                                       
Query: 361 gtgcaccttataattattttggagggtatccaggcctaagttattctatagcaaatcaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgcaccttataattattttggagggtatccaggcctaagttattctatagcaaatcaca 620

                                                                       
Query: 421 tgtgtatatattatttatattttatgttatataattctaaaaatataatgtaacgtaata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtgtatatattatttatattttatgttatataattctaaaaatataatgtaacgtaata 680

                                                                       
Query: 481 cttatttgtatttattatatatttgctttttatttcatctttacgtgtaggagtgttttg 540
           |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 681 cttatttgtaattattatatatttgctttttatttcatctttatgtgtaggagtgttttg 740

                                                                       
Query: 541 cctgcttgtatgtgcacccattgccggccccagagaagggcatctgttctcatcacttag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cctgcttgtatgtgcacccattgccggccccagagaagggcatctgttctcatcacttag 800

                                                                       
Query: 601 gaccgaagtttcagacagatgtgaactgcaatgtggcgctagaaaattaactctgggtcc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gaccgaagtttcagacagatgtgaactgcaatgtggcgctagaaaattaactctgggtcc 860

                                            
Query: 661 tctggaagatcagtaagtgttcctaactgctga 693
           |||||||||||||||||||||||||||||||||
Sbjct: 861 tctggaagatcagtaagtgttcctaactgctga 893


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1093
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1083
Effective search space:   739689
Effective search space used:   739689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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