BAC Information

Click to search

BAC

Clone NameMSMg01-270E18
Chromosome2 (Build37)
Map Location 161,681,983 - 161,682,598
singlet/doubletsinglet
Overlap genePtprt
Upstream geneZhx3, Lpin3, Emilin3, Chd6, LOC100043693, LOC100043694, LOC383769, LOC629655, LOC383770
Downstream geneLOC100043895, LOC100043896, LOC100043696
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-270E18.T7 (MSMg01no270_e18.b1)MSMg01-270E18.TJ (MSMg01no270_e18.g1)
ACCAG410172AG410173
length704738
length of high quality
(start - end)
619 (47 - 665)291 (123 - 413)
definitionCHROMAT_FILE: MSMg01no270_e18.b1 PHD_FILE: MSMg01no270_e18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:55 2005CHROMAT_FILE: MSMg01no270_e18.g1 PHD_FILE: MSMg01no270_e18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:08:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAATAGCATGTCAACAAGAACAAAGCCTCTTTGCATATGTCTTG
ATTTGAATATTAAAATTCTGGAAGAAAGTCAACTTTAATAATAATAATTA
TGCCTGCACAGAAAGATCATGGGTGATAATTTTCCATTTATGTATTTTAA
TATGAGACCAAATCAGATTATCAATCAGTACTCTAATACTTAGTGGCTTA
AAATGATAGTAATTTATCATCCTGGAAATCAGCTGCATAGGCTATTGCGC
TGGAATTGCTTGGGATCATTCAGATACCTGTCACCTGAAGGCTCGCCTGA
GGCTGGAGGTTCTGAGACAGCCTCACTCCTACTTGGAATGTTCCTTAGGA
AGCTTTGACAAACCCAATGTTTTAGAAGAAAAGACTCAGGTTCTCTAAAA
AATGACCCCAGGGATCAACAAGGTAAAAAGAGGCATTTTAAGACCTAGCT
TCTAGACCTTCATAGCATCATTTCTGTCCTGTTCTGTGGGTCAAAGAATC
CCTATGTCAGCAAAGACTTANAGGAATGGAGAAAGATACATTCTCATTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCTCTCT
CTCTCTCTCTTGGTTGGAAGAGTGATAGTGGGGCATGAGAACCTTTATTA
TAAC
TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTGTGTCTCTGCCCCTCAGCTCTGTAGT
CACAGGCACACATTGCTACCTCCAGTTTTTTATAGGAGTGCAAGGGCTCT
AAACTTAAGTCCTCACATTTGCACAGCTAACACTTTAAGACTTTAACCAC
TGAGTGATCTACTTTTGTGCTTTTTTTTTTTTTTTTTTTTTTTTGGGAAG
GGTATACACATGAGACCTCTTTCGGAGATCTTTTTTACTTAATGGGGTGA
TCTCTAGTCCAGCCACTATCCTGCAAGCTATGTGATTGCTTATGAATATT
AATTCATTGTGTATCTTCCATGGGCATTCATCTATTGGTAGACACCTAAG
TTGGTCCATAGCGTGGTTATTGTAAATTACTGCTAGAGTAAACCTGTGTA
TTCAGGTTAGCTTGACATATCTAAATTTTATTCCTTCATTTGGGAATCAT
TCTTTCCTTTGGGGTTTCTCTTTTCTTTCTCTGAAACTTTGGGATGATTC
CCTAATACCCCTGTATTCATTTTCCAGATATTTATAGTGTTTCGCTTTGC
TTTGCTAAGAAAGTTCCTCAGCTCCCTGGCTCTTTTTCTGGTTGACTTTT
AATATGGACCACCATTTTTTTAATTTCCAAGTGCTCTTTATTGGCTTCTG
GAGGTTCCTTTTGTTCACAGGTTTGCAGTGTTTTCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no270_e18.b1 MSMg01no270_e18.b1 CHROMAT_FILE:
MSMg01no270_e18.b1 PHD_FILE: MSMg01no270_e18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:08:55 2005
         (619 letters)



>mm_chr2_161681779_161682797
          Length = 1019

 Score = 1166 bits (603), Expect = 0.0
 Identities = 611/616 (99%), Gaps = 4/616 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaatagcatgtcaacaagaacaaagcctctttgcatatgtcttgatttgaatat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaatagcatgtcaacaagaacaaagcctctttgcatatgtcttgatttgaatat 264

                                                                       
Query: 65  taaaattctggaagaaagtcaactttaataataataattatgcctgcacagaaagatcat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 taaaattctggaagaaagtcaactttaataataataattatgcctgcacagaaagatcat 324

                                                                       
Query: 125 gggtgataattttccatttatgtattttaatatgagaccaaatcagattatcaatcagta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gggtgataattttccatttatgtattttaatatgagaccaaatcagattatcaatcagta 384

                                                                       
Query: 185 ctctaatacttagtggcttaaaatgatagtaatttatcatcctggaaatcagctgcatag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctctaatacttagtggcttaaaatgatagtaatttatcatcctggaaatcagctgcatag 444

                                                                       
Query: 245 gctattgcgctggaattgcttgggatcattcagatacctgtcacctgaaggctcgcctga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gctattgcgctggaattgcttgggatcattcagatacctgtcacctgaaggctcgcctga 504

                                                                       
Query: 305 ggctggaggttctgagacagcctcactcctacttggaatgttccttaggaagctttgaca 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggctggaggttctgagacagcctcactcctacttggaatgttccttaggaagctttgaca 564

                                                                       
Query: 365 aacccaatgttttagaagaaaagactcaggttctctaaaaaatgaccccagggatcaaca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aacccaatgttttagaagaaaagactcaggttctctaaaaaatgaccccagggatcaaca 624

                                                                       
Query: 425 aggtaaaaagaggcattttaagacctagcttctagaccttcatagcatcatttctgtcct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aggtaaaaagaggcattttaagacctagcttctagaccttcatagcatcatttctgtcct 684

                                                                       
Query: 485 gttctgtgggtcaaagaatccctatgtcagcaaagacttanaggaatggagaaagataca 544
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 685 gttctgtgggtcaaagaatccctatgtcagcaaagacttaaaggaatggagaaagataca 744

                                                                       
Query: 545 ttctcattctctctctctctctctctctctctctctctctctctctct----ttctctct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||
Sbjct: 745 ttctcattctctctctctctctctctctctctctctctctctctctctctctttctctct 804

                           
Query: 601 ctctctctctctcttg 616
           ||||||||||||||||
Sbjct: 805 ctctctctctctcttg 820


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 102
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space:   614481
Effective search space used:   614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)