Query= MSMg01no270_h23.b1 MSMg01no270_h23.b1 CHROMAT_FILE:
MSMg01no270_h23.b1 PHD_FILE: MSMg01no270_h23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:10 2005
(320 letters)
>mm_chr2_23406327_23407046
Length = 720
Score = 603 bits (312), Expect = e-177
Identities = 315/316 (99%)
Strand = Plus / Plus
Query: 5 gaattcttgtgaactttaaactagcttggtaactctgaaagcctgactcaagggcttgcc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgtgaactttaaactagcttggtaactctgaaagcctgactcaagggcttgcc 264
Query: 65 tttctttcacctgtgtctacaatttgggaatacagaagtggcattctggactctaatagt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttctttcacctgtgtctacaatttgggaatacagaagtggcattctggactctaatagt 324
Query: 125 cattaaaacatttagagcaaagtctatttgctgcactcacctacaaggaatgggaatgaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cattaaaacatttagagcaaagtctatttgctgcactcacctacaaggaatgggaatgaa 384
Query: 185 tataagcagtggtcacccaggacagagttagaagtcgtctaaaaaaaaaggttgtagttt 244
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tataagcagtggtcacacaggacagagttagaagtcgtctaaaaaaaaaggttgtagttt 444
Query: 245 ggctataaaatgtgaatacttgctgcctacatggcagcactgtatgtgtaaactatggaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggctataaaatgtgaatacttgctgcctacatggcagcactgtatgtgtaaactatggaa 504
Query: 305 ttttcaggaagttgca 320
||||||||||||||||
Sbjct: 505 ttttcaggaagttgca 520
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space: 221121
Effective search space used: 221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no270_h23.g1 MSMg01no270_h23.g1 CHROMAT_FILE:
MSMg01no270_h23.g1 PHD_FILE: MSMg01no270_h23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:09:10 2005
(631 letters)
>mm_chr2_23506770_23507804
Length = 1035
Score = 967 bits (500), Expect = 0.0
Identities = 573/606 (94%), Gaps = 19/606 (3%)
Strand = Plus / Minus
Query: 31 aatgaaaagttttatctgtttgaataaagaaaaaaaggatgtgaagtatccaacttgtgt 90
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1035 aatgaaaagttttatctgtttgcataaagaaaaaaaggatgtgaagtatccaacttgtgt 976
Query: 91 gtcagacacatttctttattagttttaaacttttactgtactatcttctatctactttgc 150
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 975 gtcagacacatttcttcattagttttaaacttttactgtactgtcttctatctactttgc 916
Query: 151 aagccagaaaaattaagttgattttaatgaaaatacattgacttcttatcaaaaaaaaac 210
||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct: 915 aagccagaaaaattaagttgaatttaatgaaaatacattgacttcttatc--aaaaaaac 858
Query: 211 aaacttcaaactaactacatgcatacatacatatatacagtagcaaaactttcaacatag 270
|||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 857 aaacttcaaactaactacatgc-----------tatacagtagcaaacctttcaacatag 809
Query: 271 atctgtaaatatcaaataccacatgcttttcctttagtttgaa---ttttt-tttaatta 326
||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||
Sbjct: 808 atctgtaaatatcaaataccacatgctttgcctttagtttgaatgttttttctttaatta 749
Query: 327 gggaaacaataaaatgaaagctttgcttcattcaatcctgctaaagccttctctatacat 386
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||
Sbjct: 748 gggaaacaataaaatgaaagctttgcttcagtcaatcctgctaaagccttccctataaat 689
Query: 387 atggagaatagagttggcatgaaatacaaaataaaatttaccctcaaagtttggcttaca 446
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 688 atggagaatagagttggcatgaaatacaaaataaaaattaccctcaaagtttggcttaca 629
Query: 447 acgaatggaatggctaaagattttaagacattttcacaaaaatgggatttt-tgacaatt 505
| ||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||
Sbjct: 628 aagaatggaatggctaaagattttaagacattttcacaaaaatgggattttct-aaaatt 570
Query: 506 gatatttattttggctaatataataggttgaccttttcagaatgcatgccaattgctagt 565
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 569 gatatttatttttgctaatataatgggttgaccttttcagaatgcatgccaattgctagt 510
Query: 566 ggcagagtggcaacttgccaacttgtttgttatcagaggatcctgcagtgctttaaaaac 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ggcagagtggcaacttgccaacttgtttgttatcagaggatcctgcagtgctttaaaaac 450
Query: 626 ttcctg 631
||||||
Sbjct: 449 ttcctg 444
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1035
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1025
Effective search space: 636525
Effective search space used: 636525
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
