BAC Information

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BAC

Clone NameMSMg01-271F16
Chromosome2 (Build37)
Map Location 104,712,667 - 104,713,128
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042965, Lmo2, Fbxo3, Cd59b, Cd59a, A930018P22Rik, D430041D05Rik, LOC100043349, Hipk3, LOC383735, LOC668733, Cstf3, Tcp11l1, EG622282, OTTMUSG00000014964, Depdc7, Qser1, LOC100042995, 2310047K21Rik, LOC668744, Prrg4
Downstream geneCcdc73, Ga17, 2210415I11Rik, LOC622356, Wt1, 0610012H03Rik, Rcn1, Pax6os1, LOC100043391, Pax6, Elp4, LOC100043394
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271F16.T7 (MSMg01no271_f16.b1)MSMg01-271F16.TJ (MSMg01no271_f16.g1)
ACCAG410931AG410932
length750752
length of high quality
(start - end)		626 (41 - 666)286 (70 - 355)
definitionCHROMAT_FILE: MSMg01no271_f16.b1 PHD_FILE: MSMg01no271_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:12 2005CHROMAT_FILE: MSMg01no271_f16.g1 PHD_FILE: MSMg01no271_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AGTACTTCTCACTCAAGTTATAGTGACTGATTTTAACCAGGAGCTTTGAA
TTCAATTATCTGTGGGCTTGGTATATGTAGAACTGACAAGAAGGTGCAGC
AAGTGGAGATGTCGTCCGCAGCCAAACCTGACAACCAGAGTTCAATCCCT
GCCACCCATGGAGCTACACAGCGGAGGAGAAAACCGACCGGATGAGGGTT
TCTCTAATCTCCACATAAACGCTGCGGCACACATTGACAACGGAACATAA
AATGCTGGTAAGTTTTTTTGGTCAGGTTGACAGAAGCCAGAGTCACCTGG
TAACCACCTCTATCAGGGTGAACTTTAGGCATGTCTGTGGGCACTTTCTT
GGTAAATGCTGATGTGAGAACACACAACCCACTGTTGGCAATGGGCAGGA
AGTCTGGGTTGTGTGAAAAAGCAAGCTGAGAGAGCCGTAGGGAACAAGCC
AGTAAACAACGTTCCTTCATGGCCTCTGCTTCTGTTCCTGTCTCCAGGTT
CCTGCCTTGCTTGAGTTTCTGCCCTGAATTCCCATCATGATGGAGTGTAC
ACTATACAAACCCTTCCCCTCCCAAGCTGCTTTGGGTCGTGGTATTTATC
ACAGCTACAGACACCAAGTTAACACAGCAGGGCAGGGTAAGACAGAAAGA
AAGATAGGCGTGCTGGGGGCTTCTGCTTATCATTAAATAACTGCTATTGG


ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTGGGAACTTTTCAGAAGGATATAAACCCTGG
GGCACCAAGAGGCAGGGTGGGTGGCTGCTGGTCATTAAAGGAAGATGGAG
AACGGTTGTGGTCTGTTAGTAGCCACAGTCAAAAGAAAACAAAAGAAAGA
TTAAATTTAGGGACCCGCCCAATCCTTATTTTTCTCCTCTCTAGTGTTAG
GGGGAGAAGCGGAGGGGAGGATAAAGGGTGGGAAATAGAAGAACCCACAA
AGTAGCAAAGACCAGTTATGGCATGTCCCCGTGCCTGGCTTCATCAGCTT
TAACTGTTTTTTTCTCCCCCCCGCCCTACTGCTGTAGAAAGAACAGCGTT
TCTATTTCGCCCTGCGAGACAAAAAATCTCTGTGTATCCCTAGTTGGCCT
GTAACTCCTCCTTCTATTGACCAAACTGGTCTAGAACTCAGAGATTCACC
TCCCTCTGTCTTCCAAGTACTGGCATTAAAGGTGTGCCCTACCACTGTTG
AGTCTAAGTTGCAACCTCTGGTTCCTAATCTGCTCCTGACCTCCTGTCCC
CCTACCATCCCTTTACCTTTTCAAATGCAATTTCTTACTTTCCTATTGCT
ATTTTATTTATTTCGCTGTTTCGTCGTCTCCTTTTCTTTCCCTATTATTT
TTATGCCCTATTTCCACGTCTTTATCGAACTCCCCCCATTTTTATTTCTT
TC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_f16.b1 MSMg01no271_f16.b1 CHROMAT_FILE:
MSMg01no271_f16.b1 PHD_FILE: MSMg01no271_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:12 2005
         (626 letters)



>mm_chr2_104712667_104713692
          Length = 1026

 Score =  847 bits (438), Expect = 0.0
 Identities = 456/462 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtacttctcactcaagttatagtgactgattttaaccaggagctttgaattca 64
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 gaattcagtacttcttaatcaagttatagtgactgattttaaccaggagctttgaattca 403

                                                                       
Query: 65  attatctgtgggcttggtatatgtagaactgacaagaaggtgcagcaagtggagatgtcg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 attatctgtgggcttggtatatgtagaactgacaagaaggtgcagcaagtggagatgtcg 343

                                                                       
Query: 125 tccgcagccaaacctgacaaccagagttcaatccctgccacccatggagctacacagcgg 184
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct: 342 tccgcagccaaacctgacaaacagagttcaatccctgccacccatggagctacacagtgg 283

                                                                       
Query: 185 aggagaaaaccgaccggatgagggtttctctaatctccacataaacgctgcggcacacat 244
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 aggagaaaaccgacccgacgagggtttctctaatctccacataaacgctgcggcacacat 223

                                                                       
Query: 245 tgacaacggaacataaaatgctggtaagtttttttggtcaggttgacagaagccagagtc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 tgacaacggaacataaaatgctggtaagtttttttggtcaggttgacagaagccagagtc 163

                                                                       
Query: 305 acctggtaaccacctctatcagggtgaactttaggcatgtctgtgggcactttcttggta 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 acctggtaaccacctctatcagggtgaactttaggcatgtctgtgggcactttcttggta 103

                                                                       
Query: 365 aatgctgatgtgagaacacacaacccactgttggcaatgggcaggaagtctgggttgtgt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 aatgctgatgtgagaacacacaacccactgttggcaatgggcaggaagtctgggttgtgt 43

                                                     
Query: 425 gaaaaagcaagctgagagagccgtagggaacaagccagtaaa 466
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42  gaaaaagcaagctgagagagccgtagggaacaagccagtaaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1026
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1016
Effective search space:   625856
Effective search space used:   625856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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