BAC Information

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BAC

Clone NameMSMg01-271H16
Chromosome2 (Build37)
Map Location 84,074,626 - 84,075,324
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC545429, Ppia-ps2_981.1, LOC100040818, LOC668077, Zc3h15, Itgav, Dnmt3l-ps1, D430039N05Rik, Zswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119, LOC383725
Downstream geneCalcrl, Tfpi, LOC672763, Ctnnd1, 2700094K13Rik, Txndc14, Med19, Zdhhc5, Clp1, Ypel4, Serping1, Ube2l6, Smtnl1, Timm10, Slc43a1, Rtn4rl2, Slc43a3, Prg2, Prg3, P2rx3, Ssrp1, Tnks1bp1, Agtrl1, LOC625033, Lrrc55
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271H16.T7 (MSMg01no271_h16.b1)MSMg01-271H16.TJ (MSMg01no271_h16.g1)
ACCAG411020AG411021
length747750
length of high quality
(start - end)		705 (43 - 747)384 (365 - 748)
definitionCHROMAT_FILE: MSMg01no271_h16.b1 PHD_FILE: MSMg01no271_h16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:22 2005CHROMAT_FILE: MSMg01no271_h16.g1 PHD_FILE: MSMg01no271_h16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACTGCGTAGACCAGACTGGTGTCAAATACACATAGCCATCCTAAAACT
CACTGTGTAGACCAGGCTGGTATCAAACCCACATATATCTGCCTACATCT
GCCTCTGCCTCTCAATGCCGGGATTCTTAACCAAAACAATAATTTTGTCT
TTTATGTCATGGAATCTATTCTCATTCTCCTTGAGAAATATCAGAAAAAA
TGGGACATTTTGCTCATTTTTCTTTACTTTTTCTCACATACTGAACTGGA
GAGAAAAAAATCCTTGTCCCAAATATAAAGAGTTGATCCTAGAATAATTT
GCATGTACATAAATGTGGTTTTATGTCTTTTATTTTTCTATATAATTTCT
TTTTCATTATATTTACTTGTTTTTGTAATTTTTATTAAACATCATCCTTG
GCAATTTTATATGTGTGTATAGTGTGCACTGTTGTTAATCACTCTCACTG
GCAGTGGAACCTGAGGGAATGGAGCCTTAAAACAAGGTGGACTAAAGTCT
CATGCAGTAACCAATTTTATTCAGAGAATCAGACAATTAATACTCTAATG
GTTAAGAGAAATCAGATGAGTAAAGGTCTCATGAATTCAAGCTATATACA
ATCACAAGGACAAGCTACATGTGGCAAGGCCACATTTTTTCACAGAGGTG
TATAAACAAATAACAATGACCAGTTATAACGAATAATCTGAAGTAAN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTCACAGAGATAGAGAGAGCAATTCTCAATTT
CATATGGACTAACTAACCACCCAGGAGAGTTAAAGAATTCTCAACAATAA
AAGAACTTCTTGGGGAATAGCCATCCCTGGCCCCAAGCTGTACTACAAAG
CAATAGTGACAAAAACTGCATAGTATTGGTACAGAGACAGGCAGGTAGTT
AAGTGGAACAGAACTGAAGATATAGAAATACATACAGACCTATTTTCACT
TGATCTTTGACAAGGAAGCCAAAACTATACAGTAGAAAAATAAAAGCATT
TTTAACATTTTGTGCTGGTGTAACTGGTGGTCTGCATGTAGAAGAATGCA
AATTCATCCATTTTTATATCCTTGTACAAAGCTCAAGTCTAAGTGGATCA
TGGACCTCCACATAAAACCAGATACAAGGAATCTAATAGAGACAGTGGGA
AATAGCCTTGAACACAGGATAAATTTTTCTTAACAGGATAACAATGGTTC
AGGCTCTGAGATCAACAATTGATAAATGGAACCTCATGAAACTGAAAAAC
TTCTGTAAGTCAAAGGGCACTACTAATAGGACAAAATGGCAACTTGCAGA
TTTGGAAAATGTCTTTAATAATCCTACATCTGATAGAGGGCTAATATCCA
AAATTTACAAAGAACTCAAGGAGTTAGATTCCAGAANACCAAATAACCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_h16.b1 MSMg01no271_h16.b1 CHROMAT_FILE:
MSMg01no271_h16.b1 PHD_FILE: MSMg01no271_h16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:22 2005
         (705 letters)



>mm_chr2_84074422_84075525
          Length = 1104

 Score = 1236 bits (639), Expect = 0.0
 Identities = 685/701 (97%), Gaps = 3/701 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactgcgtagaccagactggtgtcaaatacacatagccatcctaaaactcactgt 64
           |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 205 gaattcactgtgtagaccagactggtgtcaaatacacataaccatcctaaaactcactgt 264

                                                                       
Query: 65  gtagaccaggctggtatcaaacccacatatatctgcctacatctgcctctgcctctcaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtagaccaggctggtatcaaacccacatatatctgcctacatctgcctctgcctctcaat 324

                                                                       
Query: 125 gccgggattcttaaccaaaacaataattttgtcttttatgtcatggaatctattctcatt 184
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 325 gccgggattcttaaccaaaacaatagttttgtcttttatgtcatggaatctattctcatt 384

                                                                       
Query: 185 ctccttgagaaatatcagaaaaaa-tgggacattttgctcatttttctttactttttctc 243
           |||| ||||||||||||||||||| ||||||||||||||  |||||||||||||||||||
Sbjct: 385 ctccctgagaaatatcagaaaaaaatgggacattttgcttgtttttctttactttttctc 444

                                                                       
Query: 244 acatactgaactggagagaaaaaaatccttgtcccaaatataaagagttgatcctagaat 303
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acatactgaactggagagaagaaaatccttgtcccaaatataaagagttgatcctagaat 504

                                                                       
Query: 304 aatttgcatgtacataaatgtggttttatgtcttttatttttctatataatttctttttc 363
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 505 aatttgcatgtacataaatgtggttttgtgtcttttatttttctatataatttctttttc 564

                                                                       
Query: 364 attatatttacttgtttttgtaatttttattaaacatcatccttggcaattttatatgtg 423
           ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 565 attatatctacttgtttttgtaattcttattaaacatcatccttggcaattttatatgtg 624

                                                                       
Query: 424 tgtatagtgtgcactgttgttaatcactctcactggcagtggaacctgagggaatggagc 483
           |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgtatagtg--cactgttgttaatcactctcactggcagtggaacctgagggaatggagc 682

                                                                       
Query: 484 cttaaaacaaggtggactaaagtctcatgcagtaaccaattttattcagagaatcagaca 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 cttaaaacaaggtggactaaagtctcatgcagtaaccaattttattcagagaatcagaca 742

                                                                       
Query: 544 attaatactctaatggttaagagaaatcagatgagtaaaggtctcatgaattcaagctat 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 attaatactctaatggttaagagaaatcagatgagtaaaggtctcatgaattcaagctat 802

                                                                       
Query: 604 atacaatcacaaggacaagctacatgtggcaaggccacattttttcacagaggtgtataa 663
           ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct: 803 atacaatcacaaggacaagctacgtgtggcaaggccacatttttccacagaggtgtataa 862

                                                    
Query: 664 acaaataacaatgaccagttataacgaataatctgaagtaa 704
           ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 863 acaaataacaatgaccagttataacgaataatctggagtaa 903


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 705
Length of database: 1104
Length adjustment: 10
Effective length of query: 695
Effective length of database: 1094
Effective search space:   760330
Effective search space used:   760330
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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