BAC Information

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BAC

Clone NameMSMg01-271H20
Chromosome2 (Build37)
Map Location 95,280,570 - 95,280,842
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043259
Downstream geneLOC100042843
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271H20.T7 (MSMg01no271_h20.b1)MSMg01-271H20.TJ (MSMg01no271_h20.g1)
ACCAG411027AG411028
length757739
length of high quality
(start - end)
272 (378 - 649)309 (431 - 739)
definitionCHROMAT_FILE: MSMg01no271_h20.b1 PHD_FILE: MSMg01no271_h20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:22 2005CHROMAT_FILE: MSMg01no271_h20.g1 PHD_FILE: MSMg01no271_h20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTGCCGAGCATCCGCGGAATTCTAT
GCTGTGTCAACAGATATCTAATGGTAACACAGCCCCCAAGCACAGCATAC
CCCTTGAATAAACTAACAATTACACTACTTATTTTGAGAGCATTATCAAA
TTTAATCCTCAGAGAAGTTCTGTGAGGTGATCCATATTAGAATCTCAATT
TTACAGTTGGATAAGGAGGAATATGGTGCTTAAACAGCTTATTTGACTAA
ATAACCAAGTGAGCATTGCTACATGAAGTCACATACCAGATTCTTTCTCG
GGCCTAAGCAGTTCCTTTATTGTAGTAGCCACATTTTTAAGAGGAGACAT
TCTTATTTTTTTTACCACGCCCCCCCAACTGAGTAAGTGCAATGAAGTCT
CCATGGGTGACAATTTCTACACCCAGAAGAAGCACTGTAGTGTCTCCCTC
CACAAGGAGTTTTAAGGAGGAGAGAATCCTTCATCCCTGCTGAGCTGCAG
GACTGTTAGCCTTGCCCTTAAACCTGGCAGTTGTACCTACTCTCCAAAGC
ACTCAGTCCAACCTTTAAGGGATTATAAAAGAAGAGCTGACCCAAAATAA
TCTCCACTGCTTTAACTGCATTAAGGGACCCAATTTAAGTGGATTGAGGT
GTCTTAATTCATCATAACAATTCACCTCAGAAAGGGCCTTAAATGTCAAT
TTATCTTTGCAGTAAAAGTACCTTGGAGCAAAAATCGAGAGAACATATCC
CAGTGCA
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTCTTCAACCCTAGAAACACTCTGTAGCTAA
TATTTTACATATATTATCTTATAAGAACCCTGATCGGTCTTATATGTATG
GTTTAATGGTTCCCATTGTCAAATGAAGATAGCCCAAAGCCCCTGGAGTA
AAAAGTAATTTTCCCAAGTTCTCAGGAAAATGCAGTAAATGATTTGCAGA
CCATACTCTGAAGATGACCAGAAAAGGTAGTGTCATGCACCAAATTCTTT
TAGAGAACTATATAATATGTTTTTTACATTTTGGTCCAGTAGTGCAAAAA
ACACATCACATAANTCCCTATCTNCCCTCAAATTAGAAGAGAGGCTTTCT
TGTTTGTTGTAGGTATGCCTAAGAAAAAAGATATATATATATATATATAT
GTATATATATATCAGCATCTCTAGAGTATATCTTCCTCAACTTTCCATCC
ACTAAACTAGATAGCATTTATATATCTCTTTCATTAGAAAACAAAAAAAC
AGTCCATCCTTTCTCTTAGCTCCAAACTTTGTCTCTGTAACTCCTTTCAT
AGGTATTTTGTTCCCTATTCTAAGGAGTAATGAAGTATCCACCCATTGGN
CTTCTCTCTTCTTGATTTTCTTGTGTTTTGCAAATTGTATCTTGGGTGTT
CCATGTTTCTGGGCTAATTTCCACTTATCAGTGAGTGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_h20.b1 MSMg01no271_h20.b1 CHROMAT_FILE:
MSMg01no271_h20.b1 PHD_FILE: MSMg01no271_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:22 2005
         (272 letters)



>mm_chr2_95280370_95281042
          Length = 673

 Score =  513 bits (265), Expect = e-150
 Identities = 271/273 (99%), Gaps = 1/273 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgagtaagtgcaatgaagtctccatgggtgacaatttctacacccagaagaagcactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 actgagtaagtgcaatgaagtctccatgggtgacaatttctacacccagaagaagcactg 414

                                                                       
Query: 61  tagtgtctccctccacaaggagttttaaggaggagagaat-ccttcatccctgctgagct 119
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 413 tagtgtctccctccacaaggagttttaaggaggagagaatcccttcatccctgctgagct 354

                                                                       
Query: 120 gcaggactgttagccttgcccttaaacctggcagttgtacctactctccaaagcactcag 179
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 353 gcaggactgttagccttgcccttaaacctggcagttgtacctactcttcaaagcactcag 294

                                                                       
Query: 180 tccaacctttaagggattataaaagaagagctgacccaaaataatctccactgctttaac 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tccaacctttaagggattataaaagaagagctgacccaaaataatctccactgctttaac 234

                                            
Query: 240 tgcattaagggacccaatttaagtggattgagg 272
           |||||||||||||||||||||||||||||||||
Sbjct: 233 tgcattaagggacccaatttaagtggattgagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 673
Length adjustment: 9
Effective length of query: 263
Effective length of database: 664
Effective search space:   174632
Effective search space used:   174632
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)