BAC Information

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BAC

Clone NameMSMg01-271J05
Chromosome2 (Build37)
Map Location 181,130,691 - 181,130,974
singlet/doubletsinglet
Overlap genenone
Upstream geneEG622283, Slco4a1, Ntsr1, 1600027N09Rik, Ogfr, Col9a3, Tcfl5, Dido1, 2310003C23Rik, 1700019H03Rik, Bhlhb4, OTTMUSG00000016394, Ythdf1, Birc7, C030019F02Rik, LOC100039607, Arfgap1, Col20a1, Chrna4, Kcnq2, Eef1a2, 2700038C09Rik, Ptk6, Srms, LOC622592, BC051628, BC006779, Gmeb2, EG665467, Stmn3, Rtel1, Arfrp1, Zgpat, Lime1
Downstream geneBtbd4, BC050777, Tpd52l2, Dnajc5, Uckl1, Znf512b, Samd10, Prpf6, LOC100039697, Sox18, Tcea2, Rgs19, 4930526D03Rik, Oprl1, LOC665538, Myt1, Pcmtd2, Polr3k, EG432881, LOC672125
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271J05.T7 (MSMg01no271_j05.b1)MSMg01-271J05.TJ (MSMg01no271_j05.g1)
ACCAG411091AG411092
length749737
length of high quality
(start - end)
323 (44 - 366)301 (437 - 737)
definitionCHROMAT_FILE: MSMg01no271_j05.b1 PHD_FILE: MSMg01no271_j05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:28 2005CHROMAT_FILE: MSMg01no271_j05.g1 PHD_FILE: MSMg01no271_j05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAGGCTAGCCAGGGATATACAGTGCTACCCTGTAGAAGGAAGGGAAG
GAGAAAGCACAACCATTAAAAACACACCAAAAAAAAAAAAAAAAAAAAAA
AAAAAATCCCAGCACTTGGGAGGCAGAGGCAGCTGGATTTCGGAGTTCGA
GGCCAGCCTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAA
AAACCAAAAAAGGGACTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGAC
TGCTCTTCCGAAGGTCTGGAGTTCAAATCCCAGCAACCACATGGTGGCTC
ACAACCATCTGTAATAAGATCCGATGCCCCCTTCTGGAGTGTCTGAAGAC
AGCTACAATGTACTTACATATAATAAATAAATAAATCTTTAAAAAAATTA
CTTTATATATATAAGTGCACTCACTGTTGCTGTTTTCAGATACACCAGAT
CCCATTACAGATGGTTGTGAGCCACCAACCATGTGGTTGCTGGGAATTGA
ACTCAAATCTCTCTAGCTTGAAAAGAGAAATTCTTAAACTTTCTTAAATT
TATCAATGATGCCCTTCCCCCTAGTTTTTCTTCAAGAAATCCCTCTAAAA
TAGCAGTTCTCAACCTGTGAGTCCCAACTTTTTGAGAGTCAGCACTTTGG
GCTCACCTGAGACTGTCAGAAAACAAGGATTTACGTTATATCCGAAAAT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTCACTGAAAGACAGTAGAAGAGACATT
AGCACCTGACCCCACATGACCACCCACCTCACTTCACCTCCAAATAGACG
GTCTACTCACTCATCAGAGCACAGGGAGGTGGCTACACAGCTCTTAGGAG
TCACAAAACAGGCAACCTTCCAGGAGTCTGCTGAGAACAGATCAGCAGCT
TGCTATGGGAACAAGTCACCCTCTACAGCTGTCTTTACCCTGTTCAGAGC
TTCCCTATACCCATGATCCTACTGTTTGCCAAAGCGTGATGTTTGGCTAG
AGTGCATTATANACTACCCTACCCCGCCCCACAAGAAAAACCAGCATTCA
AGCTGGGCAGTGGTGGTGCACACCCATAAAAACAGCACTTGGAGAGCAGA
GAGAGGTGGATCTTTGTGAATTCTGAAGCCAGCCTGGTTTATAAAGTAAG
TTCTAGGACTGCAAGGGCTACAAAACAAACAAAACAAACAAAAACCCTTA
AACAAAAAACAGCACCCAAGCATGGCACAAGCCCAAAAGCTAGAAAGAAG
AACCACATGGTTTAATATAGTTCTGTCCTGACAACCAGACAGCACACTAT
GGCAAGGACACTTCACTGTCATCTCTACTAAGTGGATACAATCAACCTTA
AAAGCTCAGGGGATCCCCCCCGCCCCCGTGTCCCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_j05.g1 MSMg01no271_j05.g1 CHROMAT_FILE:
MSMg01no271_j05.g1 PHD_FILE: MSMg01no271_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:28 2005
         (301 letters)



>mm_chr2_181130492_181131192
          Length = 701

 Score =  526 bits (272), Expect = e-154
 Identities = 281/284 (98%), Gaps = 1/284 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttggagagcagagagaggtggatctttgtgaattctgaagccagcctggtttataaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 acttggagagcagagagaggtggatctttgtgaattctgaagccagcctggtttataaag 259

                                                                       
Query: 61  taagttctaggactgcaagggctacaaaacaaacaaaac-aaacaaaaacccttaaacaa 119
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 260 taagttctaggactgcaagggctacaaaacaaacaaaacaaaacaaaaacccttaaacaa 319

                                                                       
Query: 120 aaaacagcacccaagcatggcacaagcccaaaagctagaaagaagaaccacatggtttaa 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aaaacagcacccaagcatggcacaagcccaaaagctagaaagaagaaccacatggtttaa 379

                                                                       
Query: 180 tatagttctgtcctgacaaccagacagcacactatggcaaggacacttcactgtcatctc 239
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tatagttctgtcctgacaaccggacagcacactatggcaaggacacttcactgtcatctc 439

                                                       
Query: 240 tactaagtggatacaatcaaccttaaaagctcaggggatccccc 283
           ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 440 tactaagtgcatacaatcaaccttaaaagctcaggggatccccc 483


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 701
Length adjustment: 9
Effective length of query: 292
Effective length of database: 692
Effective search space:   202064
Effective search space used:   202064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)