BAC Information

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BAC

Clone NameMSMg01-271O20
Chromosome2 (Build37)
Map Location 163,253,743 - 163,254,410
singlet/doubletsinglet
Overlap genenone
Upstream genePtprt, LOC100043895, LOC100043896, LOC100043696, LOC497655, LOC668947, Sfrs6, L3mbtl, LOC241765, Sgk2, Ift52, Mybl2, 2410116G06Rik, LOC269389, Jph2, 3230401D17Rik, LOC100043708
Downstream geneGdap1l1, D930001I22Rik, LOC100043899, Hnf4a, 5830472M02Rik, Serinc3, Pkig, Ada, Wisp2, Kcnk15, Rims4, Ywhab, LOC381404, Tomm34, Stk4, Kcns1, Wfdc5, Wfdc12, Wfdc15a, Wfdc15b, Svs2, Svs3b, Svs4, Svs3a, Svs6, Svs5, Slpi, Matn4, Rbpjl, Sdc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-271O20.T7 (MSMg01no271_o20.b1)MSMg01-271O20.TJ (MSMg01no271_o20.g1)
ACCAG411345AG411346
length754739
length of high quality
(start - end)		324 (39 - 362)671 (69 - 739)
definitionCHROMAT_FILE: MSMg01no271_o20.b1 PHD_FILE: MSMg01no271_o20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:55 2005CHROMAT_FILE: MSMg01no271_o20.g1 PHD_FILE: MSMg01no271_o20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:10:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAC
TCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTC
CCAAGTGCTGGGATTAAAGTGTGCCACCATGCCCGGCTCTATTTTTTTTT
AAAGCAATGTATAAGCATATTCATGCAGCTCACAGGTATTTACACCCCTG
TTTTTGAGACAGGGCTTTGCTCTGTAGCTCTGGCTAGCTTGTAACTCACT
GTGTAGAACATGGTAGCTTCAAACTTACAGCAGTTCTCCTGCCTCTGTCT
CCCAAGTTCTGCGACTACAGATATGAGCGATACACCCTACAACAAACTAT
ACTCTTTCTTTATTATGCTCCCCTACCCTGTGTGTGTGTGTGTGAGTGTG
TGTGTGTGTGTGTGTGTGTAAAAAAAAAAAAAAANNTGGGTGGGGGGGTT
AAATTTTATTTTATTATAATTAATATGTTGTTTATAATAATTATTTTTAA
ATTAAATTTAATAATTAGCCGTTTCTCTCCCTTCTTTTCTCAACCCATTG
TAACACCATTCCTACCAAATATTCCTCTCCACTCATATAACTATGCTACG
ACTCTTCGATATATCCCCCATCCCTCACTACACTTTAATCCCACCTATCT
CCTCTTTTAAAATTCATCTCTTATACGTTCATACGTTAAAATCCAATAAT
CCTCTCTTATCCTTATCCCTCACCACTACCCACTTATTATATTCTATCTA
TCAA

ACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGGACCTCTGCTTGCTCCGTTCAGCCCCGCTC
GCCCCAGCCTAAAGATTTATTTATTATTATATCTAAGTACACTGTAGCTT
TCTTCAGACGCACCAGAAGAGGGCGTCAGATCTCAGTACGGATGGTTGCG
AGCCACCACCATGTGATTGGTGGGATTTGAACTCAGGACCTTTGGAAAAC
TGCTGAGCCATCTCTCCAGCCCCTGTTAACACTATCTCTTGTGCAGATAC
TGTGATGGTGTCTCTCTAACTTCCCAGGAAGAGAAACAGTGGTTCAATTT
GTGAAGTCATCTTCAACTGTGCAGTGCTTTGTATTACATTGTGCGCGCAT
GCACACACACACACACACACACACACACACACACACTCCATAACTCCAAG
GAGTTAGACTTGTTCACCTGAGACTTACAGATGAGGCCCAGGAAAGGGAA
GCACCTGTGGAGCTGGGAGTGGCTCTGTCCCTCGAAATCCCTCACTCTAA
AGCACTTCTCCTTCAAAGACCATGAGTGCCAGAAGCTGCTGCTTGGAGGA
AGATGTTAATGAGCCCTCCAGCTGTGTGAGTGCTGGGCCAGGGCTTTAAC
CTCCTCAGGGAGGCAGCACAAGGACCCAGATGTGGAGACTTGGAAGAGCT
GGATTCCTCCTGATCTCTTCACAGCACTTCCTATGAGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no271_o20.g1 MSMg01no271_o20.g1 CHROMAT_FILE:
MSMg01no271_o20.g1 PHD_FILE: MSMg01no271_o20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:55 2005
         (671 letters)



>mm_chr2_163253543_163254613
          Length = 1071

 Score = 1245 bits (644), Expect = 0.0
 Identities = 663/670 (98%), Gaps = 2/670 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggacctctgcttgctccgttcagccccgctcgccccagcctaaagatttatttattatt 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggacctctgcttgctccattcagccccgctcgccccagcctaaagatttatttattatt 260

                                                                       
Query: 61  atatctaagtacactgtagctttcttcagacgcaccagaagagggcgtcagatctcagta 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 atatctaagtacactgtagctttcttcagacacaccagaagagggcgtcagatctcagta 320

                                                                       
Query: 121 cggatggttgcgagccaccaccatgtgattggtgggatttgaactcaggacctttggaaa 180
           ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 321 cggatggtttcgagccaccaccatgtggttggtgggatttgaactcaggacctttggaaa 380

                                                                       
Query: 181 actgctgagccatctctccagcccctgttaacactatctcttgtgcagatactgtgatgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actgctgagccatctctccagcccctgttaacactatctcttgtgcagatactgtgatgg 440

                                                                       
Query: 241 tgtctctctaacttcccaggaagagaaacagtggttcaatttgtgaagtcatcttcaact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtctctctaacttcccaggaagagaaacagtggttcaatttgtgaagtcatcttcaact 500

                                                                       
Query: 301 gtgcagtgctttgtattacattgtgcgcgcatgcacacacacacacacacacacacacac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgcagtgctttgtattacattgtgcgcgcatgcacacacacacacacacacacacacac 560

                                                                       
Query: 361 acacacactccataactccaaggagttagacttgttcacctgagacttacagatgaggcc 420
           ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 acacac--tccataactccaaggagttagacttgttcacctgagacttacagatgaggcc 618

                                                                       
Query: 421 caggaaagggaagcacctgtggagctgggagtggctctgtccctcgaaatccctcactct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 caggaaagggaagcacctgtggagctgggagtggctctgtccctcgaaatccctcactct 678

                                                                       
Query: 481 aaagcacttctccttcaaagaccatgagtgccagaagctgctgcttggaggaagatgtta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 aaagcacttctccttcaaagaccatgagtgccagaagctgctgcttggaggaagatgtta 738

                                                                       
Query: 541 atgagccctccagctgtgtgagtgctgggccagggctttaacctcctcagggaggcagca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 atgagccctccagctgtgtgagtgctgggccagggctttaacctcctcagggaggcagca 798

                                                                       
Query: 601 caaggacccagatgtggagacttggaagagctggattcctcctgatctcttcacagcact 660
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 799 caaggacccagatgtggagacttggaagagctggattcctcctgatcgcttcacagcact 858

                     
Query: 661 tcctatgaga 670
           ||||||||||
Sbjct: 859 tcctatgaga 868


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space:   701321
Effective search space used:   701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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