Query= MSMg01no271_p06.b1 MSMg01no271_p06.b1 CHROMAT_FILE:
MSMg01no271_p06.b1 PHD_FILE: MSMg01no271_p06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:57 2005
(315 letters)
>mm_chr2_101547405_101548119
Length = 715
Score = 404 bits (209), Expect = e-117
Identities = 251/267 (94%), Gaps = 6/267 (2%)
Strand = Plus / Minus
Query: 5 gaattccagagc-atcacgggctacacagagaaaccctgtctccaacaataaaacaaaaa 63
|||||||||||| || | ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 519 gaattccagagcaat-aagggctacccagagaaaccctgtctccaacaataaaacaaaaa 461
Query: 64 accccaacaaaacaacccaataaaatcacaaacagaataagtaaaactaaaaaaaatagg 123
| | ||||||||||| | || |||| |||||||||||||||||||||||||| || ||||
Sbjct: 460 aacacaacaaaacaaacaaacaaaaccacaaacagaataagtaaaactaaaagaattagg 401
Query: 124 ctaaattcaaatagcctcttcttccaatatttaacagatctttccaagaatgtttgcatt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ctaaattcaaatagcctcttcttccaatatttaacagatctttccaagaatgtttgcatt 341
Query: 184 ttctaggatttcatgtgttggattctctagtttctgttttagagcctggacactgtgaag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ttctaggatttcatgtgttggattctctagtttctgttttagagcctggacactgtgaag 281
Query: 244 ttgtgt----gttagtttgggtcaaat 266
|||||| |||||||||||||||||
Sbjct: 280 ttgtgtgttagttagtttgggtcaaat 254
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space: 216036
Effective search space used: 216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no271_p06.g1 MSMg01no271_p06.g1 CHROMAT_FILE:
MSMg01no271_p06.g1 PHD_FILE: MSMg01no271_p06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:10:57 2005
(545 letters)
>mm_chr2_101489050_101489994
Length = 945
Score = 1015 bits (525), Expect = 0.0
Identities = 540/545 (99%)
Strand = Plus / Plus
Query: 1 tttgttcctgattatcttctcttgcctgagctaaccgtgtgcccctctgtctccccttct 60
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 tttgttcctgactatcttctcttgcctgagctaaccgtgtgctcctctgtctccccttct 260
Query: 61 gcagctcttcccaaaccctcctctgccaatagcattcatttatatccgccccggtgtgtt 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 gcagctcttcccaaaccctcctctgccaatagcattcatttatatccaccccggtgtgtt 320
Query: 121 ccatctgttctagatgcctgccacgtctctgaacttggccttctattcctttcctagttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccatctgttctagatgcctgccacgtctctgaacttggccttctattcctttcctagttt 380
Query: 181 tcctccattccaaacaaaagctaaatcagttccagcttttctcacccctccttcagtgcc 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 tcctccattccaaacaaaagctaaatcagttccagcttttctcacccctccttcggtgcc 440
Query: 241 tgtaaggaaaccatctctcttagttctgattagaaacacaaaaacatattgaatgttttg 300
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 tgtaaggaaaccatctctcttagttctgattagaaacacaaaaacataatgaatgttttg 500
Query: 301 gctcaaggcacgaaaagcacaagagttaccttgctccacaggcctcccggccagagtgct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctcaaggcacgaaaagcacaagagttaccttgctccacaggcctcccggccagagtgct 560
Query: 361 agaatgtctgcagcttggttgttaacactcgatgccacagagatagcaacatatgctgtc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaatgtctgcagcttggttgttaacactcgatgccacagagatagcaacatatgctgtc 620
Query: 421 tactctctccttgctctcttgtcccatagtgcacaatgctgcattatgtatcagctctca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tactctctccttgctctcttgtcccatagtgcacaatgctgcattatgtatcagctctca 680
Query: 481 ctgcccttcccactctcccacaccacagacggctaaccacagatgatgatagccaatcac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctgcccttcccactctcccacaccacagacggctaaccacagatgatgatagccaatcac 740
Query: 541 agacc 545
|||||
Sbjct: 741 agacc 745
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space: 500225
Effective search space used: 500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
