BAC Information

Click to search

BAC

Clone NameMSMg01-272B13
Chromosome2 (Build37)
Map Location 82,311,151 - 82,311,866
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040704, Zfp804a, LOC100041308, A130030D18Rik, EG624362
Downstream geneLOC433550, LOC269292, LOC433440, Fsip2, LOC545429, Ppia-ps2_981.1, LOC100040818, LOC668077
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272B13.T7 (MSMg01no272_b13.b1)MSMg01-272B13.TJ (MSMg01no272_b13.g1)
ACCAG411472AG411473
length757758
length of high quality
(start - end)		719 (39 - 757)352 (378 - 729)
definitionCHROMAT_FILE: MSMg01no272_b13.b1 PHD_FILE: MSMg01no272_b13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:09 2005CHROMAT_FILE: MSMg01no272_b13.g1 PHD_FILE: MSMg01no272_b13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAT
TTTCATCTCCTTTTAGATGGCTCCATTACTTATATATTACAACCCTTGCT
CTTTTGAATCAATTCTTCTTATTTAAGGTATCTGCTGCTTTTTCAGATAA
ACGAATAAGAACAAATGACTGTGTTAAATTTGATTTATAAAATATTAAAA
TTGTAGAGCTAAATTTTTTATAAACTGTTTATAAGACTGTTTTGCATTTT
TTCTCTTAAACATATTTTGCTTATGTTAGAACAAAACTAGCAAATTCTTG
CAAGCCATATTAACAAAGAACAACTTGGGCCATCTGGTCTTGTAGCAGAT
GGTAAATATTTAATAAAGGAATACCCCATGCAGTCTCTAGTTATTAAATA
TAAGTCATTATGTCTTTTCAATATCCTCCCTGTTTATTCTCTGTGATAGT
GTCTAGGTAGTGTGCTGTGACACAGATTAAAGAAATTTAATAATGCTATT
TTCATATAGAAGTCAAGAAGTTGTAGTCCAGAAAAAGCGTTAATTTTATT
AGCTCAACAAACATGTTAAATTAAGAGTGACTTGGGGGCTGGGTTATTTT
TCTTTGCATGTCAAAATTTGCCCAAATGGATCTATTAGTTAAAATTAATT
CACTAAATACTAAATTAGTTTAAGTCTACTGTTGGCTGATTGAGAACATG
TTGATAACAGAATGTCACAATTTTTAGAAAGCTTTATAGTTCTGAATAAA
ACAATTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTGATTATTTCTGTACCCATTTTTAATGGGG
TTATTTGATTTGATAAACCCCATCTTCTTGAGTTTTTTTGTATATATTGG
ATATTAGTCCCCTATCAGAATTAGGATTGGTAAAGATACTTTCCCAATTT
GTTGGTGGCCTTTTTGTCTTATTGACAGTTTCCTTTGCCTTGCAGAAGCT
TTGCAATTTTATGAGGTCACATTTGTCCATTCTTGATGGTTTTTGTCTTT
GAGTTTGTTTATATAGTGGATTACGTTGATGGATTTCCATATATTAAACC
ATTCCTGCTTTTCTGGAACGACACCCCATTTGATCATGATGAATGATCGT
TTTGATGTGTTCTTCAATTCAGTTAGCAAGAATTTTTTTGAGTATTTTTT
GAGTATTTTTGCATTGATATTCATAAGGGAAAGTGGTCTGAAGTTCTCTT
TCTTTGTTCAGTCTTTGTGTGTTTTAGGTATCAGAGTACTTGGGGCTTCA
TAGAATGAATTGGGTAGAGTACCTTCTGTTTTTATTTTGTGGAATAGTTG
GAGGAGAATTAGAATTAGGTCTTCTTTGAAGGTCTGATAGAACTCTGCAC
TAAACCCTTCTGGTCCTGGCCTGTTTTGGTTGGGAGACTATTAATGACTG
CTTCTATTTCTTTAGGGTATATGGGCCAGTTTAGTTCATTAATCTGATCC
TGATTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_b13.b1 MSMg01no272_b13.b1 CHROMAT_FILE:
MSMg01no272_b13.b1 PHD_FILE: MSMg01no272_b13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:09 2005
         (719 letters)



>mm_chr2_82310947_82312065
          Length = 1119

 Score = 1346 bits (696), Expect = 0.0
 Identities = 711/716 (99%), Gaps = 1/716 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattttcatctccttttagatggctccattacttatatattacaacccttgctct 64
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattttcatcagcttttagatggctccattacttatatattacaacccttgctct 264

                                                                       
Query: 65  tttgaatcaattcttcttatttaaggtatctgctgctttttcagataaacgaataagaac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttgaatcaattcttcttatttaaggtatctgctgctttttcagataaacgaataagaac 324

                                                                       
Query: 125 aaatgactgtgttaaatttgatttataaaatattaaaattgtagagctaaattttttata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaatgactgtgttaaatttgatttataaaatattaaaattgtagagctaaattttttata 384

                                                                       
Query: 185 aactgtttataagactgttttgcattttttctcttaaacatattttgcttatgttagaac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aactgtttataagactgttttgcattttttctcttaaacatattttgcttatgttagaac 444

                                                                       
Query: 245 aaaactagcaaattcttgcaagccatattaacaaagaacaacttgggccatctggtcttg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaaactagcaaattcttgcaagccatattaacaaagaacaacttgggccatctggtcttg 504

                                                                       
Query: 305 tagcagatggtaaatatttaataaaggaataccccatgcagtctctagttattaaatata 364
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 505 tagcagatggtaaatatttaataaagaaataccccatgcagtctctagttattaaatata 564

                                                                       
Query: 365 agtcattatgtcttttcaatatcctccctgtttattctctgtgatagtgtctaggtagtg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agtcattatgtcttttcaatatcctccctgtttattctctgtgatagtgtctaggtagtg 624

                                                                       
Query: 425 tgctgtgacacagattaaagaaatttaataatgctattttcatatagaagtcaagaagtt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgctgtgacacagattaaagaaatttaataatgctattttcatatagaagtcaagaagtt 684

                                                                       
Query: 485 gtagtccagaaaaagcgttaattttattagctcaacaaacatgttaaattaagagtgact 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gtagtccagaaaaagcgttaattttattagctcaacaaacatgttaaattaagagtgact 744

                                                                       
Query: 545 tgggggctgggttatttttctttgcatgtcaaaatttgcccaaatggatctattagttaa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgggggctgggttatttttctttgcatgtcaaaatttgcccaaatggatctattagttaa 804

                                                                       
Query: 605 aattaattcactaaatactaaattagtttaagtctactgttggctgattgagaacatgtt 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 aattaattcactaaatactaaattagtttaagtctactgttggctgattgagaacatgtt 864

                                                                   
Query: 665 gataacagaatgtcacaatttttagaaagctttatagttctgaataaaa-caattt 719
           ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 865 gataacagaatgtaacaatttttagaaagctttatagttctgaataaaaacaattt 920


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 719
Length of database: 1119
Length adjustment: 10
Effective length of query: 709
Effective length of database: 1109
Effective search space:   786281
Effective search space used:   786281
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


| Home | SequenceCutter | Blast | Download |