BAC Information

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BAC

Clone NameMSMg01-272E11
Chromosome2 (Build37)
Map Location 14,113,392 - 14,113,673
singlet/doubletsinglet
Overlap gene2010003H20Rik
Upstream geneRsu1, Cubn, Trdmt1, Vim, St8sia6, Ptpla, Stam
Downstream geneMrc1, Slc39a12, Cacnb2, LOC100041164, LOC625335, LOC625342, LOC100041220, Nsun6, Arl5b, LOC633061
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-272E11.T7 (MSMg01no272_e11.b1)MSMg01-272E11.TJ (MSMg01no272_e11.g1)
ACCAG411607AG411608
length733722
length of high quality
(start - end)
314 (46 - 359)282 (76 - 357)
definitionCHROMAT_FILE: MSMg01no272_e11.b1 PHD_FILE: MSMg01no272_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:23 2005CHROMAT_FILE: MSMg01no272_e11.g1 PHD_FILE: MSMg01no272_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:11:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCCGTTTTCCTATGTTCCCCATTTTTTAGTGGGTTATTTGGTTCT
CTGGAGTCCAACTTCTTGGTCCCTTGTATATATTGGATATTAGCTTTCTA
TTGGATGTGAGATTGGTAAAGATCTTTTCCCAATCTGTTGGTTGCTGTTT
TGTCCTATTGACAGTGTCCTTTGCCTTACAAAAGCTTTATAATTTTATGA
GGTCCCATTTGTCAATTTTTGTTCTTAGAGCATAAGTCATTGGTGTTCTG
CTCAGGAACTTTTCCCCTGTGTTCTAGTGTTTGAGACATTTCCTCATTTT
CTCTTCTATTTTCTTCTCCGCCCCCCCCCCTACGTGAAGGTCCTTGATCC
ACTTAGACTTGTCCCCCCCCACAAGAGATAAGAATAGATCCATTTACATT
CTTCTACATGCTAACTGCTAGTTGAACCAGTTTGAACAGTTGAAATGCTG
TCTTTTTTCCACTGGATGGTTTTAGCTCTTTTATCAAAGATCAAGGTGTG
TGGCTTCACTTATGGGTCTTCAATTCTATTCCATTGATCTACCTGCCTGT
CACTGTACCATTACCTTTTATTTTTTATCACTACAGTCCTCGCACAGTTT
GTATTCCCAAATTATTGTCTATCCCCCCAAAAATTTCTTTCACTCTTTTA
AAAAACCATTTTCTTATCCTTGTTTTTTTTTTG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTTCTCTAACAAACAGTTGGGAGG
ATTCCCAATAGCCCAAATAATTAGTAAACTAGTGATTGAAATATTAAATA
AATATCATAATGTATTTTATTACAGGGAAGAATTAAATGGATGCTTACCA
TCCTGAATTAGCAAGACACATACAAGAGCTTTGGGGTATGTGTGAGTGCA
CACACGGAGGGACAGTAGAGCATGCATGTGGAGGTCAGAGGATGACTTAA
GGATTATCCTCCTCTGCACCTTGTTTGTGGTTTGGTTTCTCATTATCTTA
CAGCTGGGTGTTTTGTACTAACCCCCGACTTTCTGGAGTCTCCTGTCTCT
GCCTCCTAACTCCCCGCACAAACACTAAATCTGGTCCTCTATGAGGGTTC
TGGAGTTCAAGTTCCCTTGCTACTGGGATAAGCACTTAACCCAGTGAGCC
ATGTCACCTGCCTAACGAAGCTTTTTTGTTACAATAAAATATTTATCTCT
CCATTCCCTAAAACCTCACCTTAATTACATTCATACAAAGTGCTCCTCAG
TATAAGAAGTATTGAATATTTCAAAGTATTAATAATTCTTCCTTACTTTT
GCATATTCTTTCTTATCCCTGTTCCGCCTTATAACACACATAATCTACAA
AGGAGACTGAAGCTCCTCTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no272_e11.g1 MSMg01no272_e11.g1 CHROMAT_FILE:
MSMg01no272_e11.g1 PHD_FILE: MSMg01no272_e11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:11:23 2005
         (282 letters)



>mm_chr2_14113192_14113873
          Length = 682

 Score =  499 bits (258), Expect = e-146
 Identities = 276/282 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttctctaacaaacagttgggaggattcccaatagcccaaataattagtaaactagtga 60
           |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 482 ctttctctaacaaacagttgggaacattcccaatagcccaaataattagtaaactagtga 423

                                                                       
Query: 61  ttgaaatattaaataaatatcataatgtattttattacagggaagaattaaatggatgct 120
           ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 422 ttgaaatattaaataaatatcataatgtattttatgacagggaagaactaaatggatgct 363

                                                                       
Query: 121 taccatcctgaattagcaagacacatacaagagctttggggtatgtgtgagtgcacacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 taccatcctgaattagcaagacacatacaagagctttggggtatgtgtgagtgcacacac 303

                                                                       
Query: 181 ggagggacagtagagcatgcatgtggaggtcagaggatgacttaaggattatcctcctct 240
           ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct: 302 ggagggacagtagagcatgcacgtggaggtcagaggataacttaaggattatcctcctct 243

                                                     
Query: 241 gcaccttgtttgtggtttggtttctcattatcttacagctgg 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 gcaccttgtttgtggtttggtttctcattatcttacagctgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)